Experiment: Choline Lysine 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23185 and AO353_23190 are separated by 350 nucleotides AO353_23190 and AO353_23195 are separated by 138 nucleotides
AO353_23185: AO353_23185 - ABC transporter ATP-binding protein, at 5,086,299 to 5,087,135
_23185
AO353_23190: AO353_23190 - LacI family transcriptional regulator, at 5,087,486 to 5,088,544
_23190
AO353_23195: AO353_23195 - AP endonuclease, at 5,088,683 to 5,089,606
_23195
Position (kb) 5087
5088
5089 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5087.108 kb on + strand at 5087.131 kb on + strand at 5087.131 kb on + strand at 5087.132 kb on - strand at 5087.132 kb on - strand at 5087.174 kb on + strand at 5087.175 kb on - strand at 5087.176 kb on + strand at 5087.176 kb on + strand at 5087.183 kb on + strand at 5087.183 kb on + strand at 5087.184 kb on - strand at 5087.184 kb on - strand at 5087.184 kb on - strand at 5087.295 kb on - strand at 5087.296 kb on + strand at 5087.298 kb on + strand at 5087.313 kb on + strand at 5087.313 kb on + strand at 5087.315 kb on + strand at 5087.377 kb on + strand at 5087.377 kb on + strand at 5087.378 kb on - strand at 5087.379 kb on + strand at 5087.379 kb on + strand at 5087.379 kb on + strand at 5087.380 kb on - strand at 5087.421 kb on + strand at 5087.421 kb on + strand at 5087.421 kb on + strand at 5087.678 kb on + strand, within AO353_23190 at 5087.678 kb on + strand, within AO353_23190 at 5087.678 kb on + strand, within AO353_23190 at 5087.679 kb on - strand at 5087.679 kb on - strand, within AO353_23190 at 5087.760 kb on + strand, within AO353_23190 at 5087.760 kb on + strand, within AO353_23190 at 5087.761 kb on - strand, within AO353_23190 at 5087.761 kb on - strand, within AO353_23190 at 5087.761 kb on - strand, within AO353_23190 at 5087.852 kb on + strand, within AO353_23190 at 5087.852 kb on + strand, within AO353_23190 at 5087.852 kb on + strand, within AO353_23190 at 5087.853 kb on - strand at 5087.853 kb on - strand, within AO353_23190 at 5087.853 kb on - strand, within AO353_23190 at 5088.027 kb on + strand, within AO353_23190 at 5088.027 kb on + strand, within AO353_23190 at 5088.027 kb on + strand, within AO353_23190 at 5088.028 kb on - strand, within AO353_23190 at 5088.028 kb on - strand, within AO353_23190 at 5088.028 kb on - strand at 5088.028 kb on - strand, within AO353_23190 at 5088.028 kb on - strand, within AO353_23190 at 5088.028 kb on - strand, within AO353_23190 at 5088.028 kb on - strand, within AO353_23190 at 5088.028 kb on - strand, within AO353_23190 at 5088.028 kb on - strand, within AO353_23190 at 5088.213 kb on + strand, within AO353_23190 at 5088.213 kb on + strand, within AO353_23190 at 5088.213 kb on + strand, within AO353_23190 at 5088.213 kb on + strand, within AO353_23190 at 5088.213 kb on + strand, within AO353_23190 at 5088.213 kb on + strand, within AO353_23190 at 5088.214 kb on - strand, within AO353_23190 at 5088.214 kb on - strand, within AO353_23190 at 5088.214 kb on - strand, within AO353_23190 at 5088.214 kb on - strand, within AO353_23190 at 5088.288 kb on + strand, within AO353_23190 at 5088.288 kb on + strand, within AO353_23190 at 5088.289 kb on - strand, within AO353_23190 at 5088.378 kb on + strand, within AO353_23190 at 5088.378 kb on + strand, within AO353_23190 at 5088.379 kb on - strand, within AO353_23190 at 5088.379 kb on - strand, within AO353_23190 at 5088.379 kb on - strand, within AO353_23190 at 5088.379 kb on - strand, within AO353_23190 at 5088.471 kb on - strand at 5088.561 kb on + strand at 5088.587 kb on + strand at 5088.587 kb on + strand at 5088.588 kb on - strand at 5088.588 kb on - strand at 5088.601 kb on + strand at 5088.601 kb on + strand at 5088.601 kb on + strand at 5088.601 kb on + strand at 5088.601 kb on + strand at 5088.601 kb on + strand at 5088.602 kb on - strand at 5088.602 kb on - strand at 5088.602 kb on - strand at 5088.602 kb on - strand at 5088.602 kb on - strand at 5088.602 kb on - strand at 5088.602 kb on - strand at 5088.602 kb on - strand at 5088.603 kb on + strand at 5088.603 kb on + strand at 5088.603 kb on + strand at 5088.603 kb on + strand at 5088.603 kb on + strand at 5088.603 kb on + strand at 5088.603 kb on + strand at 5088.603 kb on + strand at 5088.603 kb on + strand at 5088.604 kb on - strand at 5088.604 kb on - strand at 5088.604 kb on - strand at 5088.627 kb on + strand at 5088.627 kb on + strand at 5088.627 kb on + strand at 5088.628 kb on - strand at 5088.628 kb on - strand at 5088.659 kb on + strand at 5088.659 kb on + strand at 5088.660 kb on - strand at 5088.694 kb on + strand at 5088.694 kb on + strand at 5088.694 kb on + strand at 5088.694 kb on + strand at 5088.695 kb on - strand at 5088.695 kb on - strand at 5088.724 kb on - strand at 5088.816 kb on - strand, within AO353_23195 at 5088.822 kb on - strand, within AO353_23195 at 5088.894 kb on + strand, within AO353_23195 at 5088.894 kb on + strand, within AO353_23195 at 5088.895 kb on - strand, within AO353_23195 at 5088.952 kb on + strand, within AO353_23195 at 5089.199 kb on + strand, within AO353_23195 at 5089.199 kb on + strand, within AO353_23195 at 5089.200 kb on - strand, within AO353_23195 at 5089.200 kb on - strand, within AO353_23195 at 5089.263 kb on + strand, within AO353_23195 at 5089.263 kb on + strand, within AO353_23195 at 5089.264 kb on - strand, within AO353_23195 at 5089.264 kb on - strand, within AO353_23195 at 5089.264 kb on - strand, within AO353_23195 at 5089.286 kb on + strand, within AO353_23195 at 5089.286 kb on + strand, within AO353_23195 at 5089.286 kb on + strand, within AO353_23195 at 5089.287 kb on - strand, within AO353_23195 at 5089.287 kb on - strand, within AO353_23195 at 5089.287 kb on - strand, within AO353_23195 at 5089.287 kb on - strand, within AO353_23195 at 5089.289 kb on + strand, within AO353_23195 at 5089.289 kb on + strand, within AO353_23195 at 5089.343 kb on + strand, within AO353_23195 at 5089.386 kb on + strand, within AO353_23195 at 5089.386 kb on + strand, within AO353_23195 at 5089.387 kb on - strand, within AO353_23195 at 5089.508 kb on + strand, within AO353_23195 at 5089.508 kb on + strand, within AO353_23195 at 5089.508 kb on + strand, within AO353_23195 at 5089.540 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 12 mM remove 5,087,108 + -0.5 5,087,131 + +0.4 5,087,131 + -0.6 5,087,132 - -1.0 5,087,132 - -0.4 5,087,174 + +1.6 5,087,175 - +2.0 5,087,176 + +0.2 5,087,176 + -0.2 5,087,183 + -1.0 5,087,183 + +0.1 5,087,184 - +0.5 5,087,184 - -2.2 5,087,184 - +0.8 5,087,295 - +1.0 5,087,296 + +2.2 5,087,298 + +1.4 5,087,313 + +0.5 5,087,313 + +0.1 5,087,315 + +0.1 5,087,377 + -0.1 5,087,377 + +0.4 5,087,378 - -0.5 5,087,379 + +0.0 5,087,379 + -2.2 5,087,379 + -1.2 5,087,380 - -0.0 5,087,421 + +0.4 5,087,421 + +0.4 5,087,421 + +1.0 5,087,678 + AO353_23190 0.18 -2.0 5,087,678 + AO353_23190 0.18 +0.7 5,087,678 + AO353_23190 0.18 +0.4 5,087,679 - -1.0 5,087,679 - AO353_23190 0.18 -0.9 5,087,760 + AO353_23190 0.26 +0.4 5,087,760 + AO353_23190 0.26 +0.4 5,087,761 - AO353_23190 0.26 +0.2 5,087,761 - AO353_23190 0.26 +3.0 5,087,761 - AO353_23190 0.26 -0.1 5,087,852 + AO353_23190 0.35 -0.4 5,087,852 + AO353_23190 0.35 +1.3 5,087,852 + AO353_23190 0.35 -1.3 5,087,853 - -1.2 5,087,853 - AO353_23190 0.35 -0.2 5,087,853 - AO353_23190 0.35 -1.0 5,088,027 + AO353_23190 0.51 +1.5 5,088,027 + AO353_23190 0.51 -0.2 5,088,027 + AO353_23190 0.51 -1.2 5,088,028 - AO353_23190 0.51 +0.8 5,088,028 - AO353_23190 0.51 +0.4 5,088,028 - +0.4 5,088,028 - AO353_23190 0.51 +0.2 5,088,028 - AO353_23190 0.51 +1.4 5,088,028 - AO353_23190 0.51 -2.0 5,088,028 - AO353_23190 0.51 +0.2 5,088,028 - AO353_23190 0.51 -0.2 5,088,028 - AO353_23190 0.51 +1.4 5,088,213 + AO353_23190 0.69 -1.6 5,088,213 + AO353_23190 0.69 +1.8 5,088,213 + AO353_23190 0.69 -0.0 5,088,213 + AO353_23190 0.69 -0.6 5,088,213 + AO353_23190 0.69 +0.4 5,088,213 + AO353_23190 0.69 +0.2 5,088,214 - AO353_23190 0.69 -1.0 5,088,214 - AO353_23190 0.69 +0.7 5,088,214 - AO353_23190 0.69 +0.7 5,088,214 - AO353_23190 0.69 -0.1 5,088,288 + AO353_23190 0.76 +0.4 5,088,288 + AO353_23190 0.76 +0.7 5,088,289 - AO353_23190 0.76 +0.0 5,088,378 + AO353_23190 0.84 -0.5 5,088,378 + AO353_23190 0.84 +0.4 5,088,379 - AO353_23190 0.84 +2.2 5,088,379 - AO353_23190 0.84 +1.2 5,088,379 - AO353_23190 0.84 -0.6 5,088,379 - AO353_23190 0.84 +0.4 5,088,471 - +0.9 5,088,561 + -1.8 5,088,587 + -0.0 5,088,587 + +0.5 5,088,588 - -0.4 5,088,588 - +0.6 5,088,601 + -0.4 5,088,601 + +0.2 5,088,601 + +0.4 5,088,601 + -0.2 5,088,601 + +0.1 5,088,601 + -1.6 5,088,602 - -1.1 5,088,602 - +0.6 5,088,602 - +0.4 5,088,602 - -1.6 5,088,602 - -0.0 5,088,602 - -0.4 5,088,602 - +0.4 5,088,602 - -1.6 5,088,603 + -0.0 5,088,603 + -1.0 5,088,603 + +0.4 5,088,603 + +0.4 5,088,603 + +0.7 5,088,603 + -1.4 5,088,603 + +0.4 5,088,603 + -2.2 5,088,603 + -2.0 5,088,604 - -1.2 5,088,604 - -0.8 5,088,604 - +0.7 5,088,627 + +0.6 5,088,627 + +0.4 5,088,627 + -0.1 5,088,628 - +2.2 5,088,628 - +0.9 5,088,659 + +1.2 5,088,659 + +0.4 5,088,660 - -0.9 5,088,694 + -0.6 5,088,694 + +1.4 5,088,694 + -0.4 5,088,694 + -0.2 5,088,695 - +1.0 5,088,695 - +1.0 5,088,724 - +0.5 5,088,816 - AO353_23195 0.14 -0.2 5,088,822 - AO353_23195 0.15 +0.7 5,088,894 + AO353_23195 0.23 +0.4 5,088,894 + AO353_23195 0.23 +0.7 5,088,895 - AO353_23195 0.23 -0.5 5,088,952 + AO353_23195 0.29 -1.4 5,089,199 + AO353_23195 0.56 +0.8 5,089,199 + AO353_23195 0.56 -1.2 5,089,200 - AO353_23195 0.56 -1.0 5,089,200 - AO353_23195 0.56 +0.4 5,089,263 + AO353_23195 0.63 +0.4 5,089,263 + AO353_23195 0.63 +0.5 5,089,264 - AO353_23195 0.63 +1.7 5,089,264 - AO353_23195 0.63 +1.0 5,089,264 - AO353_23195 0.63 -0.6 5,089,286 + AO353_23195 0.65 +1.5 5,089,286 + AO353_23195 0.65 -0.0 5,089,286 + AO353_23195 0.65 +1.0 5,089,287 - AO353_23195 0.65 -0.6 5,089,287 - AO353_23195 0.65 -1.4 5,089,287 - AO353_23195 0.65 -0.0 5,089,287 - AO353_23195 0.65 +0.4 5,089,289 + AO353_23195 0.66 +1.0 5,089,289 + AO353_23195 0.66 -1.1 5,089,343 + AO353_23195 0.71 -0.6 5,089,386 + AO353_23195 0.76 +1.0 5,089,386 + AO353_23195 0.76 +1.6 5,089,387 - AO353_23195 0.76 +0.8 5,089,508 + AO353_23195 0.89 +0.4 5,089,508 + AO353_23195 0.89 +1.1 5,089,508 + AO353_23195 0.89 -1.8 5,089,540 + -0.3
Or see this region's nucleotide sequence