Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14385

Experiment: Choline Lysine 12 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 12 mM
3,188,619	+				+0.1
3,188,619	+				-1.5
3,188,619	+				+0.4
3,188,620	-				-0.5
3,188,620	-				+0.7
3,188,653	+				-2.2
3,188,653	+				-0.6
3,188,653	+				-1.6
3,188,653	+				-0.1
3,188,654	-				+1.5
3,188,665	+				+0.1
3,188,666	-				+1.3
3,188,666	-				+0.6
3,188,666	-				+1.1
3,188,666	-				+0.8
3,188,666	-				-0.2
3,188,667	+				+0.1
3,188,667	+				-2.1
3,188,668	-				+0.1
3,188,668	-				+0.1
3,188,668	-				-0.5
3,188,668	-				+1.3
3,188,668	-				+0.5
3,188,668	-				+0.1
3,188,675	+				+0.1
3,188,675	+				-1.2
3,188,676	-				+0.4
3,188,676	-				-1.4
3,188,676	-				+1.1
3,188,676	-				-2.1
3,188,715	+				+1.1
3,188,716	-				+0.2
3,188,850	+		AO353_14380	0.16	-0.4
3,188,850	+		AO353_14380	0.16	+0.8
3,188,851	-		AO353_14380	0.16	-1.1
3,188,961	+		AO353_14380	0.29	-0.9
3,189,042	-		AO353_14380	0.38	-2.4
3,189,042	-		AO353_14380	0.38	-1.4
3,189,042	-		AO353_14380	0.38	-1.2
3,189,042	-		AO353_14380	0.38	-0.5
3,189,363	+		AO353_14380	0.75	-2.5
3,189,363	+		AO353_14380	0.75	-1.5
3,189,364	-		AO353_14380	0.75	-0.5
3,189,364	-		AO353_14380	0.75	+0.8
3,189,364	-		AO353_14380	0.75	-0.7
3,189,506	-				-1.1
3,189,506	-				-0.5
3,189,506	-				+1.1
3,189,629	+				+2.7
3,189,629	+				+1.1
3,189,630	-				+1.7
3,189,630	-				-1.4
3,189,730	+		AO353_14385	0.20	-1.5
3,189,730	+		AO353_14385	0.20	-0.0
3,189,731	-		AO353_14385	0.20	-0.0
3,189,921	+		AO353_14385	0.44	-0.8
3,189,921	+		AO353_14385	0.44	+0.1
3,189,921	+		AO353_14385	0.44	-0.6
3,189,922	-		AO353_14385	0.44	-1.5
3,189,923	+		AO353_14385	0.44	-0.8
3,189,923	+		AO353_14385	0.44	-0.1
3,189,924	-		AO353_14385	0.44	-1.7
3,190,104	-		AO353_14385	0.67	-1.2
3,190,172	+		AO353_14385	0.75	-1.2
3,190,173	-		AO353_14385	0.75	-1.6
3,190,173	-		AO353_14385	0.75	-0.1
3,190,291	-		AO353_14385	0.90	-0.7
3,190,298	+				-0.7
3,190,298	+				+0.8
3,190,298	+				-1.6
3,190,298	+				+0.1
3,190,298	+				+0.5
3,190,299	-				-0.5
3,190,299	-				-2.1
3,190,362	+				+1.4
3,190,363	-				+0.1
3,190,363	-				-0.7
3,190,363	-				+0.3
3,190,363	-				-0.8
3,190,373	+				-0.4
3,190,373	+				+0.7
3,190,373	+				-1.4
3,190,373	+				-0.5
3,190,373	+				-0.0
3,190,373	+				-0.6
3,190,373	+				-1.5
3,190,373	+				-0.7
3,190,374	-				-1.2
3,190,374	-				-0.1
3,190,374	-				-2.1
3,190,374	-				+0.5
3,190,374	-				-1.8
3,190,374	-				-0.8
3,190,374	-				-1.5
3,190,374	-				+0.2
3,190,404	+				-1.0
3,190,405	-				-0.4
3,190,434	+				-1.4
3,190,434	+				-0.4
3,190,435	-				+1.1
3,190,435	-				+0.4
3,190,464	+				-0.2
3,190,464	+				+1.1
3,190,464	+				+0.1
3,190,464	+				+1.1
3,190,465	-				-0.0
3,190,465	-				+2.7
3,190,465	-				-1.3
3,190,465	-				-0.1
3,190,486	+				+1.7
3,190,486	+				-0.4
3,190,486	+				-0.5
3,190,486	+				+0.5
3,190,487	-				+0.2
3,190,487	-				-0.5
3,190,487	-				-0.7
3,190,515	+				+0.1
3,190,515	+				-2.2
3,190,515	+				-1.0
3,190,515	+				-0.2
3,190,515	+				-0.9
3,190,516	-				-1.7
3,190,516	-				-1.4
3,190,516	-				-0.8
3,190,516	-				-0.1
3,190,517	+				+0.8
3,190,517	+				-1.1
3,190,517	+				+0.9
3,190,517	+				-0.9
3,190,517	+				-0.9
3,190,517	+				+1.3
3,190,517	+				+0.4
3,190,517	+				-1.5
3,190,517	+				+0.5
3,190,518	-				+0.1
3,190,518	-				+1.4
3,190,518	-				+0.3
3,190,518	-				+1.1
3,190,518	-				+1.2
3,190,566	+				+1.1
3,190,566	+				-0.5
3,190,567	-				-0.5
3,190,590	-				-0.1
3,190,607	+				-0.5
3,190,607	+				+0.3
3,190,607	+				+0.1
3,190,607	+				-2.2
3,190,607	+				-0.9
3,190,607	+				-0.2
3,190,607	+				-0.9
3,190,607	+				+0.2
3,190,607	+				+0.0
3,190,607	+				+0.9
3,190,607	+				+1.3
3,190,608	-				-1.5
3,190,608	-				-0.9
3,190,608	-				+0.4
3,190,608	-				-0.4
3,190,608	-				-1.4
3,190,608	-				+1.9
3,190,608	-				+0.4
3,190,608	-				+0.5
3,190,608	-				-0.4
3,190,608	-				-0.7
3,190,615	+				+0.7
3,190,615	+				+0.4
3,190,616	-				+1.1
3,190,697	+				+0.5
3,190,698	-				+1.1
3,190,698	-				-1.5
3,190,698	-				-1.7
3,191,166	-				+1.6
3,191,166	-				-1.5
3,191,166	-				+0.3
3,191,166	-				-1.5
3,191,166	-				-0.9
3,191,166	-				-1.7
3,191,166	-				+1.0
3,191,166	-				-0.0
3,191,185	-				-1.5
3,191,204	+				+0.8
3,191,252	-				-0.7
3,191,252	-				-2.0
3,191,335	-		AO353_14395	0.11	-0.4