Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09055

Experiment: Choline Lysine 12 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 12 mM
1,986,885	+		AO353_09045	0.86	-0.8
1,986,885	+		AO353_09045	0.86	+0.1
1,986,885	+		AO353_09045	0.86	-1.5
1,986,913	+				+1.2
1,986,913	+				+0.6
1,986,913	+				-1.5
1,986,913	+				-0.4
1,986,913	+				-0.7
1,986,913	+				+1.1
1,986,914	-				-0.7
1,986,914	-				+0.9
1,986,914	-				+1.6
1,986,914	-				-1.0
1,986,914	-				-0.5
1,986,914	-				-1.3
1,986,914	-				+1.3
1,986,918	+				-0.3
1,986,918	+				-0.3
1,986,918	+				+1.9
1,986,918	+				-1.2
1,986,919	-				+1.0
1,986,919	-				+0.4
1,986,919	-				+0.1
1,986,919	-				+1.3
1,986,919	-				-0.3
1,986,919	-				+0.5
1,986,967	+				-0.7
1,986,967	+				-0.1
1,986,977	-				-1.5
1,987,226	+		AO353_09050	0.27	+1.2
1,987,226	+		AO353_09050	0.27	-2.3
1,987,227	-		AO353_09050	0.27	+0.4
1,987,419	+		AO353_09050	0.48	-1.6
1,987,419	+		AO353_09050	0.48	+0.9
1,987,485	+		AO353_09050	0.55	-0.8
1,987,485	+		AO353_09050	0.55	+0.7
1,987,485	+		AO353_09050	0.55	-0.3
1,987,486	-		AO353_09050	0.56	+0.9
1,987,486	-		AO353_09050	0.56	+2.6
1,987,486	-		AO353_09050	0.56	-0.3
1,987,486	-		AO353_09050	0.56	-0.8
1,987,597	-		AO353_09050	0.68	-1.9
1,987,764	+		AO353_09050	0.86	-1.3
1,987,764	+		AO353_09050	0.86	-0.0
1,987,800	-				-0.6
1,987,800	-				-2.5
1,987,800	-				+0.4
1,987,800	-				-1.0
1,987,835	+				+0.3
1,987,836	-				-1.0
1,987,836	-				-0.2
1,988,245	+		AO353_09055	0.51	+1.0
1,988,245	+		AO353_09055	0.51	-0.0
1,988,245	+		AO353_09055	0.51	-0.7
1,988,246	-		AO353_09055	0.52	+0.2
1,988,246	-		AO353_09055	0.52	+0.2
1,988,292	-		AO353_09055	0.58	+0.6
1,988,305	+		AO353_09055	0.60	+0.4
1,988,305	+		AO353_09055	0.60	+1.6
1,988,305	+		AO353_09055	0.60	-0.8
1,988,305	+		AO353_09055	0.60	-0.0
1,988,305	+		AO353_09055	0.60	-0.5
1,988,393	+		AO353_09055	0.72	+0.3
1,988,393	+		AO353_09055	0.72	+0.4
1,988,393	+		AO353_09055	0.72	+1.3
1,988,393	+		AO353_09055	0.72	+0.8
1,988,394	-		AO353_09055	0.73	-1.0
1,988,394	-		AO353_09055	0.73	-0.0
1,988,394	-		AO353_09055	0.73	+0.7
1,988,394	-		AO353_09055	0.73	+1.1
1,988,394	-		AO353_09055	0.73	-0.3
1,988,394	-		AO353_09055	0.73	+1.7
1,988,394	-		AO353_09055	0.73	+0.8
1,988,416	-		AO353_09055	0.76	-1.5
1,988,598	+				-0.9
1,988,598	+				-1.3
1,988,598	+				+2.3
1,988,599	-				+0.6
1,988,599	-				+0.3
1,988,599	-				+1.7
1,988,599	-				+0.3
1,988,625	-				-0.3
1,988,663	+				+0.7
1,988,663	+				+0.9
1,988,664	-				-0.7
1,988,664	-				-0.2
1,988,691	+				-0.1
1,988,691	+				+1.0
1,988,691	+				-1.5
1,988,691	+				+0.8
1,988,691	+				+0.7
1,988,692	-				+1.6
1,988,692	-				-0.0
1,988,692	-				-0.2
1,988,692	-				-1.5
1,988,692	-				+0.3
1,988,692	-				+0.9
1,988,692	-				-0.5
1,988,699	+				-0.4
1,988,699	+				-0.0
1,988,699	+				-0.3
1,988,699	+				-0.3
1,988,699	+				+0.3
1,988,700	-				-0.8
1,988,700	-				-1.0
1,988,700	-				-1.7
1,988,755	+				-0.3
1,988,755	+				-2.0
1,988,755	+				+0.5
1,988,756	-				-1.0
1,988,756	-				+0.3
1,988,766	+				+1.9
1,988,766	+				+0.3
1,988,766	+				+1.2
1,988,766	+				+0.3
1,988,766	+				-0.4
1,988,766	+				-0.7
1,988,766	+				+0.2
1,988,766	+				+0.7
1,988,766	+				-0.2
1,988,766	+				-0.7
1,988,766	+				-1.9
1,988,766	+				+0.3
1,988,767	-				-0.0
1,988,767	-				+2.1
1,988,767	-				+1.5
1,988,767	-				-2.0
1,988,767	-				+1.1
1,988,767	-				+0.0
1,988,767	-				+1.3
1,988,767	-				-0.4
1,988,767	-				-1.3
1,988,767	-				+0.5
1,988,767	-				+0.6
1,988,767	-				+1.3
1,988,767	-				+1.4
1,988,770	+				-0.2
1,988,770	+				+1.1
1,988,770	+				-0.7
1,988,771	-				+0.3
1,988,771	-				+1.0
1,988,771	-				-1.3
1,988,771	-				-0.1
1,988,771	-				+1.5
1,988,771	-				+0.4
1,988,771	-				+0.7
1,988,771	-				+1.7
1,988,771	-				+0.3
1,988,784	+				+0.5
1,988,784	+				-0.6
1,988,784	+				-1.2
1,988,785	-				-1.1
1,988,785	-				-0.7
1,988,785	-				+0.6
1,988,785	-				+2.3
1,989,053	+		AO353_09060	0.88	+0.5
1,989,053	+		AO353_09060	0.88	+1.1
1,989,054	-		AO353_09060	0.88	-0.7
1,989,054	-		AO353_09060	0.88	+1.3
1,989,054	-		AO353_09060	0.88	+1.1
1,989,054	-		AO353_09060	0.88	+1.6
1,989,054	-		AO353_09060	0.88	-1.0
1,989,096	+				+0.6
1,989,096	+				-1.2
1,989,096	+				+0.7
1,989,097	-				-0.4
1,989,097	-				+2.1
1,989,097	-				+2.3
1,989,097	-				+1.3
1,989,122	+				+1.1
1,989,122	+				+0.3
1,989,122	+				+0.5
1,989,122	+				+0.8
1,989,122	+				-0.5
1,989,122	+				-2.0
1,989,122	+				-0.1
1,989,122	+				-0.3
1,989,122	+				-1.5
1,989,122	+				-0.7
1,989,122	+				-0.9
1,989,122	+				-0.4
1,989,122	+				-0.1
1,989,122	+				-0.9
1,989,122	+				+0.1
1,989,122	+				-0.1
1,989,122	+				+1.0
1,989,122	+				+1.1
1,989,122	+				-0.3
1,989,123	-				+0.6
1,989,123	-				-0.0
1,989,123	-				+0.3
1,989,123	-				+0.1
1,989,123	-				+0.3
1,989,123	-				-0.7
1,989,123	-				-1.0
1,989,123	-				-0.1
1,989,123	-				+1.5
1,989,123	-				+0.3
1,989,123	-				+1.2
1,989,126	+				+0.0
1,989,126	+				-0.2
1,989,126	+				-0.1
1,989,126	+				-0.1
1,989,126	+				-0.9
1,989,126	+				-0.2
1,989,126	+				+0.1
1,989,126	+				-2.8
1,989,126	+				-0.0
1,989,127	-				+1.3
1,989,128	+				+0.3
1,989,128	+				+2.3
1,989,128	+				-1.0
1,989,129	-				-1.0
1,989,129	-				-0.0
1,989,129	-				+0.3
1,989,129	-				-0.7
1,989,195	+				-0.3
1,989,195	+				+0.0
1,989,195	+				-0.6
1,989,196	-				-0.7
1,989,196	-				-2.0
1,989,196	-				-1.0
1,989,264	+		AO353_09065	0.16	+2.3
1,989,264	+		AO353_09065	0.16	+0.9
1,989,264	+		AO353_09065	0.16	-0.4
1,989,264	+		AO353_09065	0.16	+0.6
1,989,264	+		AO353_09065	0.16	-0.7
1,989,264	+		AO353_09065	0.16	+2.3
1,989,265	-		AO353_09065	0.17	+3.6
1,989,280	+		AO353_09065	0.20	+0.6
1,989,280	+		AO353_09065	0.20	-0.3
1,989,280	+		AO353_09065	0.20	+1.3
1,989,280	+		AO353_09065	0.20	-1.5
1,989,280	+		AO353_09065	0.20	+1.3
1,989,281	-		AO353_09065	0.20	+1.5
1,989,281	-		AO353_09065	0.20	+0.1
1,989,281	-		AO353_09065	0.20	+0.5
1,989,281	-		AO353_09065	0.20	-0.6
1,989,281	-		AO353_09065	0.20	-2.5
1,989,281	-		AO353_09065	0.20	-1.5
1,989,284	+		AO353_09065	0.21	+1.7
1,989,284	+		AO353_09065	0.21	-0.7
1,989,284	+		AO353_09065	0.21	-0.5
1,989,285	-		AO353_09065	0.21	-0.7
1,989,329	+		AO353_09065	0.32	+1.3
1,989,329	+		AO353_09065	0.32	+1.3
1,989,387	+		AO353_09065	0.45	+0.8
1,989,387	+		AO353_09065	0.45	+1.3
1,989,388	-		AO353_09065	0.46	-1.2
1,989,388	-		AO353_09065	0.46	+0.1
1,989,388	-		AO353_09065	0.46	+1.9
1,989,443	+		AO353_09065	0.58	+0.1
1,989,443	+		AO353_09065	0.58	+1.9
1,989,443	+		AO353_09065	0.58	+0.1
1,989,444	-		AO353_09065	0.59	+0.5
1,989,551	+		AO353_09065	0.84	+1.9
1,989,552	-		AO353_09065	0.84	+1.0