Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03190

Experiment: Choline Lysine 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03180 and AO353_03185 are separated by 122 nucleotidesAO353_03185 and AO353_03190 are separated by 46 nucleotidesAO353_03190 and AO353_03195 are separated by 89 nucleotides AO353_03180: AO353_03180 - transcriptional regulator, at 678,915 to 679,811 _03180 AO353_03185: AO353_03185 - short-chain dehydrogenase, at 679,934 to 680,692 _03185 AO353_03190: AO353_03190 - hypothetical protein, at 680,739 to 681,176 _03190 AO353_03195: AO353_03195 - transcriptional regulator, at 681,266 to 682,120 _03195 Position (kb) 680 681 682Strain fitness (log2 ratio) -2 -1 0 1 2at 680.033 kb on + strand, within AO353_03185at 680.033 kb on + strand, within AO353_03185at 680.033 kb on + strand, within AO353_03185at 680.033 kb on + strand, within AO353_03185at 680.033 kb on + strand, within AO353_03185at 680.034 kb on - strand, within AO353_03185at 680.034 kb on - strand, within AO353_03185at 680.034 kb on - strand, within AO353_03185at 680.034 kb on - strand, within AO353_03185at 680.356 kb on + strand, within AO353_03185at 680.356 kb on + strand, within AO353_03185at 680.356 kb on + strand, within AO353_03185at 680.357 kb on - strand, within AO353_03185at 680.402 kb on + strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.483 kb on - strand, within AO353_03185at 680.569 kb on + strand, within AO353_03185at 680.569 kb on + strand, within AO353_03185at 680.569 kb on + strand, within AO353_03185at 680.691 kb on - strandat 680.740 kb on + strandat 680.740 kb on + strandat 680.763 kb on + strandat 680.788 kb on + strand, within AO353_03190at 680.789 kb on - strand, within AO353_03190at 680.789 kb on - strand, within AO353_03190at 680.800 kb on + strand, within AO353_03190at 680.801 kb on - strand, within AO353_03190at 680.801 kb on - strand, within AO353_03190at 680.801 kb on - strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.813 kb on - strand, within AO353_03190at 681.101 kb on + strand, within AO353_03190at 681.101 kb on + strand, within AO353_03190at 681.101 kb on + strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.102 kb on - strand, within AO353_03190at 681.234 kb on + strandat 681.569 kb on + strand, within AO353_03195at 681.569 kb on + strand, within AO353_03195at 681.569 kb on + strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.570 kb on - strand, within AO353_03195at 681.723 kb on - strand, within AO353_03195at 681.876 kb on - strand, within AO353_03195at 681.917 kb on + strand, within AO353_03195at 681.917 kb on + strand, within AO353_03195

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 12 mM
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680,033 + AO353_03185 0.13 -0.6
680,033 + AO353_03185 0.13 -0.2
680,033 + AO353_03185 0.13 -0.2
680,033 + AO353_03185 0.13 -0.2
680,033 + AO353_03185 0.13 +0.6
680,034 - AO353_03185 0.13 +0.8
680,034 - AO353_03185 0.13 +0.3
680,034 - AO353_03185 0.13 -0.2
680,034 - AO353_03185 0.13 +0.2
680,356 + AO353_03185 0.56 -0.6
680,356 + AO353_03185 0.56 +0.5
680,356 + AO353_03185 0.56 +0.8
680,357 - AO353_03185 0.56 +0.9
680,402 + AO353_03185 0.62 +0.5
680,403 - AO353_03185 0.62 +0.0
680,403 - AO353_03185 0.62 +1.8
680,403 - AO353_03185 0.62 +0.2
680,403 - AO353_03185 0.62 -0.2
680,483 - AO353_03185 0.72 -0.0
680,569 + AO353_03185 0.84 -2.2
680,569 + AO353_03185 0.84 -0.6
680,569 + AO353_03185 0.84 -0.7
680,691 - +1.1
680,740 + +0.5
680,740 + +0.1
680,763 + +0.5
680,788 + AO353_03190 0.11 +1.2
680,789 - AO353_03190 0.11 +0.2
680,789 - AO353_03190 0.11 +0.8
680,800 + AO353_03190 0.14 +0.5
680,801 - AO353_03190 0.14 +2.1
680,801 - AO353_03190 0.14 -1.5
680,801 - AO353_03190 0.14 +1.1
680,806 + AO353_03190 0.15 +0.8
680,806 + AO353_03190 0.15 +0.8
680,806 + AO353_03190 0.15 +0.6
680,806 + AO353_03190 0.15 -0.1
680,806 + AO353_03190 0.15 -0.2
680,806 + AO353_03190 0.15 -2.5
680,806 + AO353_03190 0.15 -0.2
680,806 + AO353_03190 0.15 +1.1
680,806 + AO353_03190 0.15 -0.2
680,806 + AO353_03190 0.15 +0.1
680,806 + AO353_03190 0.15 +0.6
680,806 + AO353_03190 0.15 -1.3
680,807 - AO353_03190 0.16 +0.8
680,807 - AO353_03190 0.16 +1.6
680,807 - AO353_03190 0.16 +1.1
680,807 - AO353_03190 0.16 +0.6
680,807 - AO353_03190 0.16 +1.7
680,807 - AO353_03190 0.16 -0.0
680,807 - AO353_03190 0.16 +0.6
680,807 - AO353_03190 0.16 +0.4
680,807 - AO353_03190 0.16 +0.7
680,807 - AO353_03190 0.16 -0.8
680,813 - AO353_03190 0.17 +0.6
681,101 + AO353_03190 0.83 +0.8
681,101 + AO353_03190 0.83 +0.6
681,101 + AO353_03190 0.83 +0.1
681,102 - AO353_03190 0.83 -2.2
681,102 - AO353_03190 0.83 -0.8
681,102 - AO353_03190 0.83 -1.2
681,102 - AO353_03190 0.83 -1.5
681,102 - AO353_03190 0.83 +0.9
681,234 + +0.4
681,569 + AO353_03195 0.35 +0.0
681,569 + AO353_03195 0.35 +0.8
681,569 + AO353_03195 0.35 +0.8
681,570 - AO353_03195 0.36 +1.5
681,570 - AO353_03195 0.36 -0.3
681,570 - AO353_03195 0.36 -0.8
681,570 - AO353_03195 0.36 +1.3
681,570 - AO353_03195 0.36 +0.7
681,570 - AO353_03195 0.36 +1.0
681,723 - AO353_03195 0.53 -1.2
681,876 - AO353_03195 0.71 +0.8
681,917 + AO353_03195 0.76 -1.0
681,917 + AO353_03195 0.76 -1.2

Or see this region's nucleotide sequence