Experiment: Choline Lysine 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03005 and AO353_03010 are separated by 128 nucleotides AO353_03010 and AO353_03015 overlap by 1 nucleotides
AO353_03005: AO353_03005 - succinylarginine dihydrolase, at 636,583 to 637,929
_03005
AO353_03010: AO353_03010 - succinylglutamate-semialdehyde dehydrogenase, at 638,058 to 639,521
_03010
AO353_03015: AO353_03015 - arginine N-succinyltransferase, at 639,521 to 640,546
_03015
Position (kb) 638
639
640 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 637.139 kb on + strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.140 kb on - strand, within AO353_03005 at 637.298 kb on + strand, within AO353_03005 at 637.524 kb on - strand, within AO353_03005 at 637.524 kb on - strand, within AO353_03005 at 637.573 kb on - strand, within AO353_03005 at 637.862 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.881 kb on + strand at 637.897 kb on + strand at 637.897 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.920 kb on - strand at 637.920 kb on - strand at 637.920 kb on - strand at 637.957 kb on + strand at 637.957 kb on + strand at 637.957 kb on + strand at 637.958 kb on - strand at 637.958 kb on - strand at 637.958 kb on - strand at 637.959 kb on + strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.017 kb on - strand at 638.017 kb on - strand at 638.017 kb on - strand at 638.030 kb on - strand at 638.030 kb on - strand at 638.030 kb on - strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.138 kb on - strand at 638.149 kb on + strand at 638.149 kb on + strand at 638.149 kb on + strand at 638.150 kb on - strand at 638.150 kb on - strand at 638.152 kb on + strand at 638.152 kb on + strand at 638.153 kb on - strand at 638.153 kb on - strand at 638.317 kb on + strand, within AO353_03010 at 638.723 kb on + strand, within AO353_03010 at 638.724 kb on - strand, within AO353_03010 at 638.731 kb on + strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.928 kb on + strand, within AO353_03010 at 638.928 kb on + strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 639.088 kb on + strand, within AO353_03010 at 639.088 kb on + strand, within AO353_03010 at 639.088 kb on + strand, within AO353_03010 at 639.089 kb on - strand, within AO353_03010 at 639.089 kb on - strand, within AO353_03010 at 639.089 kb on - strand, within AO353_03010 at 639.200 kb on + strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.201 kb on - strand, within AO353_03010 at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.508 kb on + strand at 639.509 kb on - strand at 639.509 kb on - strand at 639.522 kb on + strand at 639.522 kb on + strand at 639.523 kb on - strand at 639.523 kb on - strand at 639.523 kb on - strand at 639.560 kb on + strand at 639.560 kb on + strand at 639.560 kb on + strand at 639.560 kb on + strand at 639.561 kb on - strand at 639.561 kb on - strand at 639.561 kb on - strand at 639.807 kb on + strand, within AO353_03015 at 639.808 kb on - strand, within AO353_03015 at 639.915 kb on + strand, within AO353_03015 at 639.915 kb on + strand, within AO353_03015 at 639.915 kb on + strand, within AO353_03015 at 639.916 kb on - strand, within AO353_03015 at 639.916 kb on - strand, within AO353_03015 at 640.243 kb on - strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.377 kb on + strand, within AO353_03015 at 640.378 kb on - strand, within AO353_03015 at 640.378 kb on - strand, within AO353_03015
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 12 mM remove 637,139 + AO353_03005 0.41 -1.4 637,139 + AO353_03005 0.41 -0.3 637,140 - AO353_03005 0.41 -0.2 637,298 + AO353_03005 0.53 +1.4 637,524 - AO353_03005 0.70 +0.7 637,524 - AO353_03005 0.70 +0.8 637,573 - AO353_03005 0.73 +1.7 637,862 + +1.1 637,877 + +1.6 637,877 + +2.5 637,877 + -0.5 637,877 + -0.4 637,881 + +2.1 637,897 + +0.6 637,897 + +0.8 637,919 + +1.3 637,919 + +0.5 637,919 + +0.9 637,919 + +0.1 637,920 - +1.3 637,920 - +1.5 637,920 - -0.3 637,957 + -1.2 637,957 + +0.8 637,957 + +1.8 637,958 - +0.2 637,958 - -0.6 637,958 - -0.7 637,959 + -0.4 637,960 - -1.2 637,960 - +0.1 637,960 - -0.2 637,960 - +1.1 637,960 - -0.4 638,007 + +0.1 638,007 + -0.1 638,007 + +0.8 638,007 + -0.2 638,007 + +1.1 638,007 + +0.7 638,008 - -0.2 638,008 - -1.0 638,008 - -0.8 638,016 + +1.3 638,016 + +2.0 638,016 + -0.2 638,016 + -1.2 638,017 - -0.2 638,017 - +0.3 638,017 - -0.0 638,030 - -1.5 638,030 - +0.4 638,030 - +0.1 638,037 + +0.8 638,037 + -0.2 638,037 + +0.1 638,037 + +1.4 638,037 + +0.2 638,037 + +0.3 638,037 + +1.1 638,037 + +1.8 638,038 - -0.6 638,038 - -0.7 638,038 - -0.4 638,038 - +0.4 638,038 - +0.6 638,038 - -0.0 638,038 - -0.2 638,038 - +0.2 638,038 - +0.1 638,038 - -0.3 638,038 - +0.8 638,038 - -1.2 638,038 - +0.1 638,038 - -1.2 638,038 - -0.4 638,059 + +0.3 638,059 + +1.7 638,059 + +0.2 638,059 + -0.2 638,059 + +2.0 638,060 - +1.5 638,060 - -1.0 638,060 - +0.8 638,060 - -0.2 638,060 - -1.3 638,138 - +0.6 638,149 + +0.2 638,149 + +0.4 638,149 + +1.5 638,150 - -1.0 638,150 - -0.8 638,152 + +0.6 638,152 + +0.9 638,153 - +1.4 638,153 - +0.4 638,317 + AO353_03010 0.18 +0.6 638,723 + AO353_03010 0.45 -1.0 638,724 - AO353_03010 0.45 +0.8 638,731 + AO353_03010 0.46 +0.3 638,732 - AO353_03010 0.46 +1.4 638,732 - AO353_03010 0.46 +1.0 638,732 - AO353_03010 0.46 -1.4 638,928 + AO353_03010 0.59 +0.4 638,928 + AO353_03010 0.59 +0.0 638,929 - AO353_03010 0.59 +1.0 638,929 - AO353_03010 0.59 +1.1 638,929 - AO353_03010 0.59 +1.0 639,088 + AO353_03010 0.70 +2.8 639,088 + AO353_03010 0.70 +1.8 639,088 + AO353_03010 0.70 +1.7 639,089 - AO353_03010 0.70 -2.2 639,089 - AO353_03010 0.70 +0.3 639,089 - AO353_03010 0.70 -0.4 639,200 + AO353_03010 0.78 -0.5 639,201 - AO353_03010 0.78 +1.6 639,201 - AO353_03010 0.78 +0.8 639,201 - AO353_03010 0.78 +2.8 639,201 - AO353_03010 0.78 +0.8 639,201 - AO353_03010 0.78 -0.2 639,508 + +0.3 639,508 + +0.9 639,508 + -0.4 639,508 + -0.0 639,508 + +0.2 639,508 + +0.8 639,508 + -1.9 639,508 + -0.0 639,508 + +2.4 639,508 + -2.2 639,509 - +1.8 639,509 - +0.8 639,522 + +1.5 639,522 + +1.8 639,523 - +0.5 639,523 - -0.8 639,523 - +0.5 639,560 + -0.9 639,560 + +0.3 639,560 + +1.2 639,560 + -0.8 639,561 - -1.2 639,561 - -0.1 639,561 - -0.8 639,807 + AO353_03015 0.28 -1.7 639,808 - AO353_03015 0.28 +0.1 639,915 + AO353_03015 0.38 -0.2 639,915 + AO353_03015 0.38 -2.0 639,915 + AO353_03015 0.38 -0.0 639,916 - AO353_03015 0.38 +2.1 639,916 - AO353_03015 0.38 +0.8 640,243 - AO353_03015 0.70 +1.6 640,377 + AO353_03015 0.83 -1.0 640,377 + AO353_03015 0.83 +0.8 640,377 + AO353_03015 0.83 +0.4 640,377 + AO353_03015 0.83 -0.5 640,377 + AO353_03015 0.83 -0.2 640,378 - AO353_03015 0.84 +0.4 640,378 - AO353_03015 0.84 -1.8
Or see this region's nucleotide sequence