Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01675

Experiment: Choline Lysine 12 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01670 and AO353_01675 are separated by 270 nucleotidesAO353_01675 and AO353_01680 overlap by 1 nucleotides AO353_01670: AO353_01670 - orotidine 5'-phosphate decarboxylase, at 351,802 to 352,536 _01670 AO353_01675: AO353_01675 - transcriptional regulator, at 352,807 to 353,571 _01675 AO353_01680: AO353_01680 - histidine kinase, at 353,571 to 354,611 _01680 Position (kb) 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 352.540 kb on - strandat 352.576 kb on + strandat 352.577 kb on - strandat 352.577 kb on - strandat 352.610 kb on + strandat 352.610 kb on + strandat 352.611 kb on - strandat 352.611 kb on - strandat 352.611 kb on - strandat 352.611 kb on - strandat 352.646 kb on + strandat 352.646 kb on + strandat 352.646 kb on + strandat 352.646 kb on + strandat 352.646 kb on + strandat 352.647 kb on - strandat 352.647 kb on - strandat 352.647 kb on - strandat 352.647 kb on - strandat 352.647 kb on - strandat 352.647 kb on - strandat 352.647 kb on - strandat 352.647 kb on - strandat 352.706 kb on + strandat 352.706 kb on + strandat 352.706 kb on + strandat 352.738 kb on + strandat 352.738 kb on + strandat 352.738 kb on + strandat 352.738 kb on + strandat 352.738 kb on + strandat 352.739 kb on - strandat 352.739 kb on - strandat 352.739 kb on - strandat 352.739 kb on - strandat 352.802 kb on + strandat 352.802 kb on + strandat 352.802 kb on + strandat 352.802 kb on + strandat 352.802 kb on + strandat 352.802 kb on + strandat 352.802 kb on + strandat 352.803 kb on - strandat 352.933 kb on + strand, within AO353_01675at 352.933 kb on + strand, within AO353_01675at 353.011 kb on + strand, within AO353_01675at 353.012 kb on - strand, within AO353_01675at 353.012 kb on - strand, within AO353_01675at 353.012 kb on - strand, within AO353_01675at 353.012 kb on - strand, within AO353_01675at 353.167 kb on + strand, within AO353_01675at 353.167 kb on + strand, within AO353_01675at 353.167 kb on + strand, within AO353_01675at 353.167 kb on + strand, within AO353_01675at 353.167 kb on + strand, within AO353_01675at 353.167 kb on + strand, within AO353_01675at 353.168 kb on - strand, within AO353_01675at 353.168 kb on - strand, within AO353_01675at 353.168 kb on - strand, within AO353_01675at 353.409 kb on - strand, within AO353_01675at 353.542 kb on + strandat 353.543 kb on - strandat 353.783 kb on - strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.801 kb on + strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.802 kb on - strand, within AO353_01680at 353.951 kb on + strand, within AO353_01680at 353.952 kb on - strand, within AO353_01680at 353.952 kb on - strand, within AO353_01680at 354.150 kb on + strand, within AO353_01680at 354.151 kb on - strand, within AO353_01680at 354.151 kb on - strand, within AO353_01680at 354.151 kb on - strand, within AO353_01680at 354.151 kb on - strand, within AO353_01680at 354.167 kb on + strand, within AO353_01680at 354.167 kb on + strand, within AO353_01680at 354.167 kb on + strand, within AO353_01680at 354.167 kb on + strand, within AO353_01680at 354.168 kb on - strand, within AO353_01680at 354.168 kb on - strand, within AO353_01680at 354.550 kb on + strandat 354.551 kb on - strandat 354.551 kb on - strandat 354.551 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 12 mM
remove
352,540 - -0.1
352,576 + -0.3
352,577 - +0.9
352,577 - -0.1
352,610 + -0.1
352,610 + -0.3
352,611 - +1.5
352,611 - +0.6
352,611 - +0.5
352,611 - +1.3
352,646 + -2.8
352,646 + +1.0
352,646 + +0.4
352,646 + +1.6
352,646 + -1.1
352,647 - +0.4
352,647 - -1.1
352,647 - +0.0
352,647 - +0.1
352,647 - -0.2
352,647 - -0.2
352,647 - +0.4
352,647 - +1.0
352,706 + +0.9
352,706 + -2.3
352,706 + +2.0
352,738 + +0.0
352,738 + -0.2
352,738 + +0.7
352,738 + -0.9
352,738 + +0.7
352,739 - +0.4
352,739 - -0.9
352,739 - +1.0
352,739 - -0.6
352,802 + +0.6
352,802 + +1.7
352,802 + +1.0
352,802 + -0.9
352,802 + +0.9
352,802 + -0.7
352,802 + +1.0
352,803 - +1.3
352,933 + AO353_01675 0.16 -0.0
352,933 + AO353_01675 0.16 -1.4
353,011 + AO353_01675 0.27 +0.7
353,012 - AO353_01675 0.27 -1.9
353,012 - AO353_01675 0.27 -2.6
353,012 - AO353_01675 0.27 -0.8
353,012 - AO353_01675 0.27 -0.3
353,167 + AO353_01675 0.47 +0.3
353,167 + AO353_01675 0.47 -1.6
353,167 + AO353_01675 0.47 -1.0
353,167 + AO353_01675 0.47 -2.3
353,167 + AO353_01675 0.47 +0.7
353,167 + AO353_01675 0.47 -1.2
353,168 - AO353_01675 0.47 -0.8
353,168 - AO353_01675 0.47 -1.5
353,168 - AO353_01675 0.47 +1.3
353,409 - AO353_01675 0.79 -0.1
353,542 + -0.0
353,543 - -1.0
353,783 - AO353_01680 0.20 -0.3
353,801 + AO353_01680 0.22 +0.4
353,801 + AO353_01680 0.22 -2.9
353,801 + AO353_01680 0.22 -0.0
353,801 + AO353_01680 0.22 -1.6
353,801 + AO353_01680 0.22 +1.0
353,801 + AO353_01680 0.22 +0.7
353,801 + AO353_01680 0.22 +0.3
353,802 - AO353_01680 0.22 -0.2
353,802 - AO353_01680 0.22 -0.6
353,802 - AO353_01680 0.22 -0.1
353,802 - AO353_01680 0.22 -0.6
353,802 - AO353_01680 0.22 -1.6
353,951 + AO353_01680 0.37 +0.7
353,952 - AO353_01680 0.37 +1.7
353,952 - AO353_01680 0.37 +0.7
354,150 + AO353_01680 0.56 -0.0
354,151 - AO353_01680 0.56 -0.7
354,151 - AO353_01680 0.56 +0.4
354,151 - AO353_01680 0.56 -1.3
354,151 - AO353_01680 0.56 -0.9
354,167 + AO353_01680 0.57 +0.2
354,167 + AO353_01680 0.57 +1.7
354,167 + AO353_01680 0.57 -0.8
354,167 + AO353_01680 0.57 +0.6
354,168 - AO353_01680 0.57 +0.3
354,168 - AO353_01680 0.57 +0.7
354,550 + -0.3
354,551 - -0.3
354,551 - +0.3
354,551 - -0.0

Or see this region's nucleotide sequence