Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2854

Experiment: MoYLS4 with HQNO 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2852 and DVU2853 are separated by 1 nucleotidesDVU2853 and DVU2854 are separated by 1 nucleotidesDVU2854 and DVU2855 are separated by 122 nucleotides DVU2852: DVU2852 - tail protein, putative (TIGR), at 2,952,844 to 2,953,320 DVU2852 DVU2853: DVU2853 - phage baseplate assembly protein V, putative (TIGR), at 2,953,322 to 2,953,960 DVU2853 DVU2854: DVU2854 - tail protein, putative (TIGR), at 2,953,962 to 2,955,095 DVU2854 DVU2855: DVU2855 - tail/DNA circulation protein, putative (TIGR), at 2,955,218 to 2,956,417 DVU2855 Position (kb) 2953 2954 2955 2956Strain fitness (log2 ratio) -1 0 1at 2952.972 kb on + strand, within DVU2852at 2952.972 kb on + strand, within DVU2852at 2952.980 kb on - strand, within DVU2852at 2953.222 kb on + strand, within DVU2852at 2953.270 kb on - strand, within DVU2852at 2953.499 kb on - strand, within DVU2853at 2953.505 kb on + strand, within DVU2853at 2953.646 kb on + strand, within DVU2853at 2953.655 kb on - strand, within DVU2853at 2953.655 kb on - strand, within DVU2853at 2954.583 kb on + strand, within DVU2854at 2954.591 kb on - strand, within DVU2854at 2954.598 kb on - strand, within DVU2854at 2954.626 kb on - strand, within DVU2854at 2954.718 kb on + strand, within DVU2854at 2954.780 kb on - strand, within DVU2854at 2954.780 kb on - strand, within DVU2854at 2954.785 kb on - strand, within DVU2854at 2955.227 kb on + strandat 2955.284 kb on - strandat 2955.348 kb on - strand, within DVU2855at 2955.484 kb on - strand, within DVU2855at 2955.633 kb on + strand, within DVU2855at 2955.656 kb on - strand, within DVU2855at 2955.979 kb on + strand, within DVU2855

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with HQNO 100uM
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2,952,972 + DVU2852 0.27 +0.4
2,952,972 + DVU2852 0.27 -1.1
2,952,980 - DVU2852 0.29 -0.1
2,953,222 + DVU2852 0.79 -1.3
2,953,270 - DVU2852 0.89 -0.9
2,953,499 - DVU2853 0.28 -0.2
2,953,505 + DVU2853 0.29 -0.0
2,953,646 + DVU2853 0.51 -0.2
2,953,655 - DVU2853 0.52 -0.4
2,953,655 - DVU2853 0.52 -0.1
2,954,583 + DVU2854 0.55 -0.8
2,954,591 - DVU2854 0.55 -0.5
2,954,598 - DVU2854 0.56 -0.4
2,954,626 - DVU2854 0.59 -0.3
2,954,718 + DVU2854 0.67 -0.2
2,954,780 - DVU2854 0.72 -0.2
2,954,780 - DVU2854 0.72 -1.0
2,954,785 - DVU2854 0.73 -1.2
2,955,227 + -1.0
2,955,284 - -0.8
2,955,348 - DVU2855 0.11 -0.5
2,955,484 - DVU2855 0.22 -0.6
2,955,633 + DVU2855 0.35 -0.1
2,955,656 - DVU2855 0.36 -1.0
2,955,979 + DVU2855 0.63 +0.1

Or see this region's nucleotide sequence