Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2259

Experiment: D-Cycloserine 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.0625 mg/ml
2,327,305	-	avtA	Synpcc7942_2258	0.23	+1.5
2,327,389	+	avtA	Synpcc7942_2258	0.29	-1.0
2,327,397	-	avtA	Synpcc7942_2258	0.30	+0.3
2,327,402	-	avtA	Synpcc7942_2258	0.30	+0.9
2,327,435	+	avtA	Synpcc7942_2258	0.33	-0.2
2,327,541	-	avtA	Synpcc7942_2258	0.41	-0.7
2,327,559	+	avtA	Synpcc7942_2258	0.43	+0.4
2,327,602	-	avtA	Synpcc7942_2258	0.46	+0.9
2,327,628	+	avtA	Synpcc7942_2258	0.48	-0.3
2,327,642	+	avtA	Synpcc7942_2258	0.49	+1.9
2,327,658	+	avtA	Synpcc7942_2258	0.50	-2.1
2,327,666	-	avtA	Synpcc7942_2258	0.51	+2.3
2,327,666	-	avtA	Synpcc7942_2258	0.51	-3.2
2,327,666	-	avtA	Synpcc7942_2258	0.51	+1.4
2,327,673	+	avtA	Synpcc7942_2258	0.51	+2.0
2,327,688	+	avtA	Synpcc7942_2258	0.53	+1.9
2,327,737	+	avtA	Synpcc7942_2258	0.56	-1.3
2,327,738	-	avtA	Synpcc7942_2258	0.56	+0.8
2,327,744	+	avtA	Synpcc7942_2258	0.57	+1.6
2,327,757	-	avtA	Synpcc7942_2258	0.58	-1.3
2,327,761	+	avtA	Synpcc7942_2258	0.58	-0.7
2,327,815	+	avtA	Synpcc7942_2258	0.62	+3.8
2,327,815	+	avtA	Synpcc7942_2258	0.62	+1.1
2,327,823	-	avtA	Synpcc7942_2258	0.63	-1.7
2,327,823	-	avtA	Synpcc7942_2258	0.63	+1.5
2,327,864	+	avtA	Synpcc7942_2258	0.66	-1.1
2,327,877	+	avtA	Synpcc7942_2258	0.67	+0.3
2,327,877	+	avtA	Synpcc7942_2258	0.67	+0.2
2,327,911	+	avtA	Synpcc7942_2258	0.70	-1.9
2,327,911	+	avtA	Synpcc7942_2258	0.70	+0.5
2,327,919	-	avtA	Synpcc7942_2258	0.71	-0.5
2,327,919	-	avtA	Synpcc7942_2258	0.71	+0.3
2,327,993	-	avtA	Synpcc7942_2258	0.76	+0.3
2,328,012	+	avtA	Synpcc7942_2258	0.78	-1.1
2,328,019	-	avtA	Synpcc7942_2258	0.78	+1.1
2,328,020	-	avtA	Synpcc7942_2258	0.78	-0.5
2,328,059	+	avtA	Synpcc7942_2258	0.81	+2.9
2,328,059	+	avtA	Synpcc7942_2258	0.81	-1.3
2,328,064	+	avtA	Synpcc7942_2258	0.82	+0.0
2,328,064	+	avtA	Synpcc7942_2258	0.82	-2.1
2,328,067	-	avtA	Synpcc7942_2258	0.82	+0.3
2,328,067	-	avtA	Synpcc7942_2258	0.82	+1.1
2,328,069	+	avtA	Synpcc7942_2258	0.82	-0.2
2,328,072	-	avtA	Synpcc7942_2258	0.82	-0.6
2,328,132	-				+0.3
2,328,148	-	avtA	Synpcc7942_2258	0.88	-2.1
2,328,151	+	avtA	Synpcc7942_2258	0.89	+1.6
2,328,167	+	avtA	Synpcc7942_2258	0.90	-0.5
2,328,168	+				+1.1
2,328,250	+				+0.3
2,328,256	+				-2.7
2,328,256	-				-1.3
2,328,258	+				-2.1
2,328,258	+				-1.6
2,328,266	-				+2.2
2,328,266	-				-1.1
2,328,266	-				-1.7
2,328,266	-				+1.7
2,328,274	-				+1.6
2,328,343	-				-1.5
2,328,361	+	rimM	Synpcc7942_2259	0.11	-4.4
2,328,424	+	rimM	Synpcc7942_2259	0.23	-2.1
2,328,688	-	rimM	Synpcc7942_2259	0.71	-3.7
2,328,761	-	rimM	Synpcc7942_2259	0.84	-3.1
2,328,826	+				-2.3
2,328,834	-				-5.4
2,328,855	+				-0.1
2,328,914	-		Synpcc7942_2260	0.11	-1.3
2,328,930	+		Synpcc7942_2260	0.16	+0.9
2,328,930	+		Synpcc7942_2260	0.16	-1.7
2,328,938	-		Synpcc7942_2260	0.18	-1.7
2,328,938	-		Synpcc7942_2260	0.18	+2.3
2,328,989	+		Synpcc7942_2260	0.34	-0.6
2,328,989	+		Synpcc7942_2260	0.34	+1.0
2,328,989	+		Synpcc7942_2260	0.34	+2.6
2,329,022	+		Synpcc7942_2260	0.44	+1.0
2,329,045	-		Synpcc7942_2260	0.51	-0.5
2,329,079	-		Synpcc7942_2260	0.61	+0.2
2,329,092	+		Synpcc7942_2260	0.65	-1.1
2,329,092	+		Synpcc7942_2260	0.65	+0.3
2,329,092	+		Synpcc7942_2260	0.65	-0.0
2,329,100	-		Synpcc7942_2260	0.68	+0.2
2,329,170	+		Synpcc7942_2260	0.89	+0.6
2,329,178	-				+1.6
2,329,227	+				+0.2
2,329,235	-				+2.1
2,329,242	+				+0.7
2,329,259	+				+1.9
2,329,345	+				-0.8
2,329,349	-				-0.6
2,329,369	+				-0.7
2,329,374	-				-0.4
2,329,374	-				-1.3
2,329,419	-				+0.3
2,329,419	-				-2.3
2,329,432	-				-2.7
2,329,439	+				+1.7
2,329,453	-				+1.3
2,329,455	-				-0.7
2,329,457	+				-1.1
2,329,457	+				+1.9
2,329,481	+				-1.7
2,329,481	+				-0.3
2,329,487	-		Synpcc7942_2261	0.11	+1.4
2,329,489	-		Synpcc7942_2261	0.12	+0.8
2,329,508	+		Synpcc7942_2261	0.17	+1.4
2,329,523	-		Synpcc7942_2261	0.22	+0.7
2,329,527	+		Synpcc7942_2261	0.23	-2.5
2,329,528	+		Synpcc7942_2261	0.23	-0.5
2,329,535	-		Synpcc7942_2261	0.25	-2.3
2,329,536	-		Synpcc7942_2261	0.25	-0.6
2,329,572	-		Synpcc7942_2261	0.36	+0.3
2,329,585	+		Synpcc7942_2261	0.40	+0.1
2,329,594	-		Synpcc7942_2261	0.42	+1.6
2,329,612	-		Synpcc7942_2261	0.48	+2.5
2,329,652	-		Synpcc7942_2261	0.59	-0.9
2,329,652	-		Synpcc7942_2261	0.59	-1.3
2,329,655	+		Synpcc7942_2261	0.60	-0.0
2,329,660	+				+0.3
2,329,663	-		Synpcc7942_2261	0.63	+0.9
2,329,735	+		Synpcc7942_2261	0.84	+1.1
2,329,735	+				-1.3
2,329,735	+		Synpcc7942_2261	0.84	-0.6
2,329,743	-		Synpcc7942_2261	0.86	+1.1
2,329,752	+		Synpcc7942_2261	0.89	-0.3
2,329,774	+				+1.5
2,329,781	+				-0.1
2,329,784	-				+1.6
2,329,786	+				-1.7
2,329,794	-				+1.4
2,329,794	-				-0.7
2,329,797	+				-0.7
2,329,797	+				-1.7
2,329,805	-				+1.6
2,329,805	-				-2.7
2,329,821	+				+0.5
2,329,834	+				-0.2
2,329,835	+				+1.1
2,329,846	+				+0.1
2,329,846	+				+1.6
2,329,846	+				-0.3