Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2008

Experiment: D-Cycloserine 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.0625 mg/ml
2,074,885	+	cdv3	Synpcc7942_2006	0.42	-3.8
2,074,903	+	cdv3	Synpcc7942_2006	0.44	-3.5
2,074,909	-	cdv3	Synpcc7942_2006	0.45	-2.6
2,074,911	-	cdv3	Synpcc7942_2006	0.46	-0.0
2,074,937	+	cdv3	Synpcc7942_2006	0.49	-1.8
2,074,951	+	cdv3	Synpcc7942_2006	0.51	-1.4
2,074,967	+	cdv3	Synpcc7942_2006	0.54	-1.9
2,075,001	+	cdv3	Synpcc7942_2006	0.59	-2.6
2,075,014	-	cdv3	Synpcc7942_2006	0.61	-1.2
2,075,034	+	cdv3	Synpcc7942_2006	0.63	-1.4
2,075,116	-	cdv3	Synpcc7942_2006	0.75	-0.6
2,075,242	+				-1.6
2,075,242	+				-1.6
2,075,250	-				-1.2
2,075,250	-				+0.3
2,075,250	-				-0.6
2,075,250	-				-1.2
2,075,250	-				-0.8
2,075,252	+				-0.4
2,075,800	+				+1.1
2,075,820	-				+0.9
2,075,838	+				+0.6
2,075,839	+				+2.3
2,075,839	+				-0.9
2,075,839	+				-0.9
2,075,846	+				-0.2
2,075,846	-				+0.3
2,075,847	-				-0.1
2,075,875	-				-0.3
2,075,920	+		Synpcc7942_2008	0.10	+2.8
2,075,920	+		Synpcc7942_2008	0.10	-0.5
2,075,920	+		Synpcc7942_2008	0.10	-0.0
2,075,920	+		Synpcc7942_2008	0.10	+0.8
2,075,920	+		Synpcc7942_2008	0.10	+0.9
2,075,920	+		Synpcc7942_2008	0.10	+1.9
2,075,920	+		Synpcc7942_2008	0.10	-1.8
2,075,922	+		Synpcc7942_2008	0.11	-1.6
2,075,928	-		Synpcc7942_2008	0.12	-1.0
2,075,928	-		Synpcc7942_2008	0.12	+0.7
2,075,928	-		Synpcc7942_2008	0.12	+2.5
2,075,928	-		Synpcc7942_2008	0.12	+1.3
2,075,928	-		Synpcc7942_2008	0.12	+1.1
2,075,951	+		Synpcc7942_2008	0.17	-0.4
2,075,954	+		Synpcc7942_2008	0.17	+1.0
2,075,962	-		Synpcc7942_2008	0.19	-2.6
2,075,967	+		Synpcc7942_2008	0.20	+0.1
2,075,970	-		Synpcc7942_2008	0.20	-0.4
2,075,979	+		Synpcc7942_2008	0.22	+2.0
2,076,009	+		Synpcc7942_2008	0.29	-0.6
2,076,011	-		Synpcc7942_2008	0.29	+3.5
2,076,040	+		Synpcc7942_2008	0.35	+2.0
2,076,050	+		Synpcc7942_2008	0.37	-0.8
2,076,050	+		Synpcc7942_2008	0.37	+0.7
2,076,053	-		Synpcc7942_2008	0.38	+1.0
2,076,082	+		Synpcc7942_2008	0.44	-0.6
2,076,101	+		Synpcc7942_2008	0.48	+1.8
2,076,167	-		Synpcc7942_2008	0.61	+1.6
2,076,170	+		Synpcc7942_2008	0.62	+1.0
2,076,196	+		Synpcc7942_2008	0.67	+1.7
2,076,207	+				+0.4
2,076,207	+		Synpcc7942_2008	0.70	+2.9
2,076,215	-		Synpcc7942_2008	0.71	-0.8
2,076,220	-		Synpcc7942_2008	0.72	+0.4
2,076,226	+		Synpcc7942_2008	0.73	+1.3
2,076,227	-		Synpcc7942_2008	0.74	-4.6
2,076,236	+		Synpcc7942_2008	0.76	-2.2
2,076,249	-		Synpcc7942_2008	0.78	-1.0
2,076,264	+		Synpcc7942_2008	0.81	-0.7
2,076,264	+		Synpcc7942_2008	0.81	+0.4
2,076,291	+		Synpcc7942_2008	0.87	-0.9
2,076,299	-		Synpcc7942_2008	0.89	-0.9
2,076,357	-				-1.2
2,076,373	-				-1.9
2,076,384	+				-1.2
2,076,444	-				-5.1
2,076,503	+				+0.4
2,076,503	+				-2.2
2,076,511	-				-2.8
2,076,511	-				-0.3
2,076,556	+				+0.4
2,076,556	+				-1.2
2,076,557	+				-0.6
2,076,558	+				-0.2
2,076,573	+				-0.6
2,076,579	+				-3.3
2,076,581	-				-3.1
2,076,592	-				-2.9
2,076,606	+				-2.6
2,076,614	+				-0.6
2,076,617	-				-3.1
2,076,622	-				-1.6
2,076,627	+				-3.2
2,076,627	-				-0.6
2,076,663	+		Synpcc7942_2009	0.11	-2.2
2,076,731	+		Synpcc7942_2009	0.13	-3.1
2,076,749	+		Synpcc7942_2009	0.14	-0.6
2,076,749	+		Synpcc7942_2009	0.14	-1.6
2,076,757	-		Synpcc7942_2009	0.14	-2.2
2,076,786	+		Synpcc7942_2009	0.15	-2.2
2,076,846	+		Synpcc7942_2009	0.17	-1.6
2,076,872	-		Synpcc7942_2009	0.18	-2.2
2,076,902	+		Synpcc7942_2009	0.19	-2.2
2,076,903	+		Synpcc7942_2009	0.19	-2.2
2,076,903	+		Synpcc7942_2009	0.19	-3.1
2,076,910	+		Synpcc7942_2009	0.20	-1.2
2,076,918	-		Synpcc7942_2009	0.20	-2.2
2,076,918	-		Synpcc7942_2009	0.20	-1.2
2,076,931	-		Synpcc7942_2009	0.20	-4.0
2,076,951	+		Synpcc7942_2009	0.21	+0.1
2,076,969	-		Synpcc7942_2009	0.22	-2.2
2,076,970	+		Synpcc7942_2009	0.22	-0.6
2,076,987	+		Synpcc7942_2009	0.22	-0.6
2,076,987	+		Synpcc7942_2009	0.22	-1.2
2,077,020	+		Synpcc7942_2009	0.24	-1.5
2,077,020	+		Synpcc7942_2009	0.24	-2.5
2,077,020	+		Synpcc7942_2009	0.24	-3.2
2,077,020	+		Synpcc7942_2009	0.24	-1.2
2,077,028	-		Synpcc7942_2009	0.24	-2.8
2,077,046	+		Synpcc7942_2009	0.25	-1.6
2,077,123	+		Synpcc7942_2009	0.27	-2.8
2,077,134	+		Synpcc7942_2009	0.28	-1.6
2,077,152	-		Synpcc7942_2009	0.28	-2.4
2,077,172	-		Synpcc7942_2009	0.29	-3.1
2,077,192	-		Synpcc7942_2009	0.30	-1.2
2,077,192	-		Synpcc7942_2009	0.30	-1.2
2,077,192	-		Synpcc7942_2009	0.30	-2.6
2,077,287	-		Synpcc7942_2009	0.33	-3.7
2,077,321	-		Synpcc7942_2009	0.35	-1.9
2,077,335	+		Synpcc7942_2009	0.35	-1.4
2,077,338	-		Synpcc7942_2009	0.35	-3.5