Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1426

Experiment: D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntccmO and rbcL are separated by 390 nucleotidesrbcL and rbcS are separated by 90 nucleotidesrbcS and purK are separated by 101 nucleotides Synpcc7942_1425: ccmO - carbon dioxide concentrating mechanism protein CcmO, at 1,478,240 to 1,479,070 ccmO Synpcc7942_1426: rbcL - ribulose bisophosphate carboxylase, at 1,479,461 to 1,480,879 rbcL Synpcc7942_1427: rbcS - ribulose 1,5-bisphosphate carboxylase small subunit, at 1,480,970 to 1,481,305 rbcS Synpcc7942_1428: purK - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 1,481,407 to 1,482,594 purK Position (kb) 1479 1480 1481Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1479.019 kb on - strandat 1479.036 kb on + strandat 1479.036 kb on + strandat 1479.044 kb on - strandat 1479.044 kb on - strandat 1479.044 kb on - strandat 1479.092 kb on - strandat 1479.120 kb on + strandat 1479.120 kb on + strandat 1479.127 kb on + strandat 1479.127 kb on + strandat 1479.128 kb on - strandat 1479.132 kb on + strandat 1479.135 kb on - strandat 1479.140 kb on - strandat 1479.159 kb on - strandat 1481.341 kb on + strandat 1481.343 kb on - strandat 1481.404 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.0625 mg/ml
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1,479,019 - -0.8
1,479,036 + -1.0
1,479,036 + -2.6
1,479,044 - +0.2
1,479,044 - +0.2
1,479,044 - -0.8
1,479,092 - -0.1
1,479,120 + -0.5
1,479,120 + +1.8
1,479,127 + +0.9
1,479,127 + +2.2
1,479,128 - +0.2
1,479,132 + -1.9
1,479,135 - +3.0
1,479,140 - +0.8
1,479,159 - +1.6
1,481,341 + -0.9
1,481,343 - -0.3
1,481,404 - +1.0

Or see this region's nucleotide sequence