Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1122

Experiment: D-Cycloserine 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.0625 mg/ml
1,139,804	-		Synpcc7942_1121	0.62	-1.4
1,139,806	+		Synpcc7942_1121	0.62	-3.2
1,139,814	+		Synpcc7942_1121	0.62	-3.7
1,139,814	+		Synpcc7942_1121	0.62	-2.0
1,139,819	+		Synpcc7942_1121	0.63	-2.0
1,139,822	-		Synpcc7942_1121	0.63	-3.4
1,139,824	+		Synpcc7942_1121	0.63	-1.5
1,139,827	-		Synpcc7942_1121	0.63	+0.3
1,139,839	+		Synpcc7942_1121	0.64	-1.7
1,139,839	+				-0.7
1,139,839	+				-0.7
1,139,866	+		Synpcc7942_1121	0.65	-3.9
1,139,867	-		Synpcc7942_1121	0.65	-3.9
1,139,873	+		Synpcc7942_1121	0.65	-3.4
1,139,874	+		Synpcc7942_1121	0.65	-2.3
1,139,896	+		Synpcc7942_1121	0.66	-2.9
1,139,938	-		Synpcc7942_1121	0.68	-1.3
1,139,953	-		Synpcc7942_1121	0.69	-1.3
1,139,953	-		Synpcc7942_1121	0.69	-5.0
1,139,989	+		Synpcc7942_1121	0.71	+0.3
1,140,024	+		Synpcc7942_1121	0.72	-3.0
1,140,061	+		Synpcc7942_1121	0.74	-2.5
1,140,098	-		Synpcc7942_1121	0.76	-1.7
1,140,144	+		Synpcc7942_1121	0.78	-3.0
1,140,163	+		Synpcc7942_1121	0.79	-3.7
1,140,171	-		Synpcc7942_1121	0.79	-3.2
1,140,206	-		Synpcc7942_1121	0.81	-4.4
1,140,215	+		Synpcc7942_1121	0.81	+0.3
1,140,215	+		Synpcc7942_1121	0.81	-1.3
1,140,223	-		Synpcc7942_1121	0.81	-0.7
1,140,223	-				+0.3
1,140,264	+		Synpcc7942_1121	0.83	-4.6
1,140,269	+		Synpcc7942_1121	0.84	-2.7
1,140,272	-		Synpcc7942_1121	0.84	-2.7
1,140,277	+		Synpcc7942_1121	0.84	+0.3
1,140,282	+		Synpcc7942_1121	0.84	-1.7
1,140,282	+		Synpcc7942_1121	0.84	-2.4
1,140,282	-		Synpcc7942_1121	0.84	-0.9
1,140,290	-		Synpcc7942_1121	0.85	-2.3
1,140,290	-		Synpcc7942_1121	0.85	-2.4
1,140,290	-		Synpcc7942_1121	0.85	-1.8
1,140,303	+		Synpcc7942_1121	0.85	-1.3
1,140,324	+		Synpcc7942_1121	0.86	-2.4
1,140,362	+		Synpcc7942_1121	0.88	-1.7
1,140,367	-		Synpcc7942_1121	0.88	-1.7
1,140,374	+		Synpcc7942_1121	0.88	-1.3
1,140,406	-		Synpcc7942_1121	0.90	-2.5
1,140,434	-				-0.7
1,140,485	-				-1.3
1,140,498	+				+0.3
1,140,544	-				-2.7
1,140,559	+				-0.7
1,140,562	-				-3.0
1,140,566	+				-0.1
1,140,567	-				-3.2
1,140,574	-				-2.0
1,140,575	-				-3.4
1,140,610	+				-2.8
1,140,611	+				-3.6
1,140,619	-				-2.5
1,140,619	-				-3.3
1,140,619	-				-3.6
1,140,644	+				-3.5
1,140,644	+				-2.5
1,140,646	+				-3.9
1,140,648	+				-1.0
1,140,651	+				-2.7
1,140,653	+				-1.7
1,140,658	-				-0.8
1,140,661	-				-2.3
1,140,668	-				-0.4
1,140,700	-				-0.5
1,140,700	-				+1.0
1,140,725	-				-1.5
1,140,733	-				+1.2
1,141,247	-				-2.8
1,141,275	-				+3.1
1,141,278	+				+0.1
1,141,286	-				+2.0
1,141,286	-				-0.5
1,141,286	-				-2.7
1,141,342	+				-0.5
1,141,449	+				-1.3
1,141,456	+				-2.3
1,141,456	+				-1.7
1,141,456	+				-1.7
1,141,456	+				+0.3
1,141,464	-				+0.1
1,141,464	-				-3.0
1,141,489	-				-1.7
1,141,495	+	rnb	Synpcc7942_1124	0.10	-3.0
1,141,505	-	rnb	Synpcc7942_1124	0.11	-1.3
1,141,561	+	rnb	Synpcc7942_1124	0.14	+0.1
1,141,569	+	rnb	Synpcc7942_1124	0.14	-1.3
1,141,574	+	rnb	Synpcc7942_1124	0.14	-2.0
1,141,630	-	rnb	Synpcc7942_1124	0.17	-2.4
1,141,685	+	rnb	Synpcc7942_1124	0.20	-0.5
1,141,685	+	rnb	Synpcc7942_1124	0.20	-0.1
1,141,685	+	rnb	Synpcc7942_1124	0.20	-1.0
1,141,685	+	rnb	Synpcc7942_1124	0.20	-0.4
1,141,693	-	rnb	Synpcc7942_1124	0.20	+3.2
1,141,777	+	rnb	Synpcc7942_1124	0.24	-2.0
1,141,785	-	rnb	Synpcc7942_1124	0.25	+0.4
1,141,832	+	rnb	Synpcc7942_1124	0.27	+0.3
1,141,832	-	rnb	Synpcc7942_1124	0.27	-0.3
1,141,840	-	rnb	Synpcc7942_1124	0.27	-2.0
1,141,855	+	rnb	Synpcc7942_1124	0.28	-0.1
1,141,857	-	rnb	Synpcc7942_1124	0.28	-1.7
1,141,874	+	rnb	Synpcc7942_1124	0.29	-1.7
1,141,930	+	rnb	Synpcc7942_1124	0.32	-3.5
1,141,931	+				-1.3
1,141,938	-	rnb	Synpcc7942_1124	0.32	+1.0
1,141,938	-	rnb	Synpcc7942_1124	0.32	+0.3
1,141,953	+	rnb	Synpcc7942_1124	0.33	-0.2
1,141,958	+	rnb	Synpcc7942_1124	0.33	-2.3
1,141,966	+	rnb	Synpcc7942_1124	0.34	-3.3