Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0875

Experiment: D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0874 and Synpcc7942_0875 are separated by 3 nucleotidesSynpcc7942_0875 and alaS are separated by 88 nucleotides Synpcc7942_0874: Synpcc7942_0874 - DEAD/DEAH box helicase-like, at 874,390 to 877,449 _0874 Synpcc7942_0875: Synpcc7942_0875 - hypothetical protein, at 877,453 to 877,887 _0875 Synpcc7942_0876: alaS - alanyl-tRNA synthetase, at 877,976 to 880,675 alaS Position (kb) 877 878Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 876.494 kb on - strand, within Synpcc7942_0874at 876.501 kb on + strand, within Synpcc7942_0874at 876.514 kb on - strand, within Synpcc7942_0874at 876.521 kb on - strand, within Synpcc7942_0874at 876.521 kb on - strand, within Synpcc7942_0874at 876.524 kb on + strand, within Synpcc7942_0874at 876.524 kb on + strand, within Synpcc7942_0874at 876.524 kb on + strand, within Synpcc7942_0874at 876.572 kb on + strand, within Synpcc7942_0874at 876.572 kb on + strand, within Synpcc7942_0874at 876.572 kb on + strand, within Synpcc7942_0874at 876.580 kb on - strand, within Synpcc7942_0874at 876.580 kb on - strand, within Synpcc7942_0874at 876.607 kb on + strand, within Synpcc7942_0874at 876.620 kb on + strand, within Synpcc7942_0874at 876.621 kb on + strand, within Synpcc7942_0874at 876.625 kb on + strand, within Synpcc7942_0874at 876.625 kb on + strand, within Synpcc7942_0874at 876.625 kb on + strand, within Synpcc7942_0874at 876.625 kb on + strand, within Synpcc7942_0874at 876.625 kb on + strand, within Synpcc7942_0874at 876.625 kb on + strand, within Synpcc7942_0874at 876.625 kb on + strand, within Synpcc7942_0874at 876.625 kb on + strand, within Synpcc7942_0874at 876.640 kb on + strand, within Synpcc7942_0874at 876.640 kb on + strand, within Synpcc7942_0874at 876.640 kb on + strand, within Synpcc7942_0874at 876.643 kb on - strand, within Synpcc7942_0874at 876.648 kb on - strand, within Synpcc7942_0874at 876.648 kb on - strand, within Synpcc7942_0874at 876.650 kb on + strand, within Synpcc7942_0874at 876.658 kb on - strand, within Synpcc7942_0874at 876.659 kb on - strand, within Synpcc7942_0874at 876.672 kb on - strand, within Synpcc7942_0874at 876.688 kb on + strand, within Synpcc7942_0874at 876.699 kb on + strand, within Synpcc7942_0874at 876.699 kb on + strand, within Synpcc7942_0874at 876.699 kb on + strand, within Synpcc7942_0874at 876.699 kb on + strand, within Synpcc7942_0874at 876.706 kb on + strand, within Synpcc7942_0874at 876.706 kb on - strand, within Synpcc7942_0874at 876.707 kb on - strand, within Synpcc7942_0874at 876.707 kb on - strand, within Synpcc7942_0874at 876.707 kb on - strand, within Synpcc7942_0874at 876.746 kb on - strand, within Synpcc7942_0874at 876.761 kb on - strand, within Synpcc7942_0874at 876.808 kb on - strand, within Synpcc7942_0874at 876.812 kb on + strand, within Synpcc7942_0874at 876.819 kb on - strand, within Synpcc7942_0874at 876.822 kb on - strand, within Synpcc7942_0874at 876.826 kb on + strand, within Synpcc7942_0874at 876.826 kb on + strand, within Synpcc7942_0874at 876.852 kb on + strand, within Synpcc7942_0874at 876.865 kb on - strand, within Synpcc7942_0874at 876.887 kb on + strand, within Synpcc7942_0874at 876.897 kb on + strand, within Synpcc7942_0874at 876.905 kb on - strand, within Synpcc7942_0874at 876.920 kb on - strand, within Synpcc7942_0874at 876.958 kb on - strand, within Synpcc7942_0874at 877.000 kb on - strand, within Synpcc7942_0874at 877.015 kb on - strand, within Synpcc7942_0874at 877.071 kb on + strand, within Synpcc7942_0874at 877.076 kb on + strand, within Synpcc7942_0874at 877.079 kb on - strand, within Synpcc7942_0874at 877.079 kb on - strand, within Synpcc7942_0874at 877.081 kb on + strand, within Synpcc7942_0874at 877.088 kb on + strand, within Synpcc7942_0874at 877.096 kb on - strand, within Synpcc7942_0874at 877.156 kb on + strandat 877.166 kb on - strandat 877.175 kb on + strandat 877.175 kb on + strandat 877.175 kb on + strandat 877.175 kb on + strandat 877.175 kb on + strandat 877.183 kb on - strandat 877.183 kb on - strandat 877.183 kb on - strandat 877.183 kb on - strandat 877.183 kb on - strandat 877.209 kb on - strandat 877.216 kb on - strandat 877.219 kb on + strandat 877.250 kb on - strandat 877.290 kb on - strandat 877.340 kb on + strandat 877.421 kb on - strandat 877.433 kb on + strandat 877.435 kb on + strandat 877.440 kb on + strandat 877.443 kb on - strandat 877.445 kb on + strandat 877.445 kb on + strandat 877.445 kb on + strandat 877.453 kb on - strandat 877.453 kb on - strandat 877.453 kb on - strandat 877.469 kb on + strandat 877.475 kb on + strandat 877.487 kb on - strandat 877.565 kb on - strand, within Synpcc7942_0875at 877.567 kb on - strand, within Synpcc7942_0875at 877.572 kb on + strand, within Synpcc7942_0875at 877.605 kb on + strand, within Synpcc7942_0875at 877.605 kb on + strand, within Synpcc7942_0875at 877.605 kb on + strand, within Synpcc7942_0875at 877.605 kb on + strand, within Synpcc7942_0875at 877.605 kb on + strand, within Synpcc7942_0875at 877.605 kb on + strand, within Synpcc7942_0875at 877.605 kb on + strand, within Synpcc7942_0875at 877.605 kb on + strand, within Synpcc7942_0875at 877.605 kb on + strand, within Synpcc7942_0875at 877.613 kb on - strand, within Synpcc7942_0875at 877.613 kb on - strand, within Synpcc7942_0875at 877.613 kb on - strand, within Synpcc7942_0875at 877.613 kb on - strand, within Synpcc7942_0875at 877.613 kb on - strand, within Synpcc7942_0875at 877.613 kb on - strand, within Synpcc7942_0875at 877.613 kb on - strand, within Synpcc7942_0875at 877.618 kb on + strand, within Synpcc7942_0875at 877.631 kb on - strand, within Synpcc7942_0875at 877.632 kb on - strand, within Synpcc7942_0875at 877.636 kb on + strand, within Synpcc7942_0875at 877.644 kb on - strand, within Synpcc7942_0875at 877.679 kb on + strand, within Synpcc7942_0875at 877.679 kb on + strand, within Synpcc7942_0875at 877.687 kb on - strand, within Synpcc7942_0875at 877.687 kb on - strand, within Synpcc7942_0875at 877.714 kb on + strand, within Synpcc7942_0875at 877.737 kb on - strand, within Synpcc7942_0875at 877.737 kb on - strand, within Synpcc7942_0875at 877.761 kb on + strand, within Synpcc7942_0875at 877.761 kb on + strand, within Synpcc7942_0875at 877.761 kb on + strand, within Synpcc7942_0875at 877.769 kb on - strand, within Synpcc7942_0875at 877.788 kb on - strand, within Synpcc7942_0875at 877.788 kb on - strand, within Synpcc7942_0875at 877.828 kb on - strand, within Synpcc7942_0875at 877.841 kb on - strand, within Synpcc7942_0875at 877.858 kb on - strandat 877.899 kb on - strandat 877.907 kb on - strandat 877.927 kb on + strandat 877.931 kb on - strandat 877.980 kb on + strandat 878.049 kb on - strandat 878.059 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.0625 mg/ml
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876,494 - Synpcc7942_0874 0.69 +1.2
876,501 + Synpcc7942_0874 0.69 -0.4
876,514 - Synpcc7942_0874 0.69 +0.2
876,521 - Synpcc7942_0874 0.70 -1.5
876,521 - Synpcc7942_0874 0.70 -2.4
876,524 + Synpcc7942_0874 0.70 -1.7
876,524 + Synpcc7942_0874 0.70 -1.6
876,524 + Synpcc7942_0874 0.70 -1.4
876,572 + Synpcc7942_0874 0.71 -1.5
876,572 + Synpcc7942_0874 0.71 -1.1
876,572 + Synpcc7942_0874 0.71 -0.5
876,580 - Synpcc7942_0874 0.72 -2.1
876,580 - Synpcc7942_0874 0.72 -1.8
876,607 + Synpcc7942_0874 0.72 -1.4
876,620 + Synpcc7942_0874 0.73 -0.4
876,621 + Synpcc7942_0874 0.73 -2.1
876,625 + Synpcc7942_0874 0.73 +0.2
876,625 + Synpcc7942_0874 0.73 -3.1
876,625 + Synpcc7942_0874 0.73 +0.6
876,625 + Synpcc7942_0874 0.73 +0.5
876,625 + Synpcc7942_0874 0.73 +0.8
876,625 + Synpcc7942_0874 0.73 +0.9
876,625 + Synpcc7942_0874 0.73 +0.5
876,625 + Synpcc7942_0874 0.73 +0.4
876,640 + Synpcc7942_0874 0.74 -2.8
876,640 + Synpcc7942_0874 0.74 +2.0
876,640 + Synpcc7942_0874 0.74 +0.2
876,643 - Synpcc7942_0874 0.74 +0.6
876,648 - Synpcc7942_0874 0.74 -3.4
876,648 - Synpcc7942_0874 0.74 +1.8
876,650 + Synpcc7942_0874 0.74 +0.2
876,658 - Synpcc7942_0874 0.74 -0.8
876,659 - Synpcc7942_0874 0.74 -1.3
876,672 - Synpcc7942_0874 0.75 +0.9
876,688 + Synpcc7942_0874 0.75 -1.9
876,699 + Synpcc7942_0874 0.75 +0.2
876,699 + Synpcc7942_0874 0.75 +0.0
876,699 + Synpcc7942_0874 0.75 +0.0
876,699 + Synpcc7942_0874 0.75 +0.7
876,706 + Synpcc7942_0874 0.76 -0.4
876,706 - Synpcc7942_0874 0.76 -0.3
876,707 - Synpcc7942_0874 0.76 -1.4
876,707 - Synpcc7942_0874 0.76 -2.1
876,707 - Synpcc7942_0874 0.76 -1.8
876,746 - Synpcc7942_0874 0.77 -1.6
876,761 - Synpcc7942_0874 0.77 +0.0
876,808 - Synpcc7942_0874 0.79 -1.8
876,812 + Synpcc7942_0874 0.79 +0.8
876,819 - Synpcc7942_0874 0.79 +0.1
876,822 - Synpcc7942_0874 0.79 -0.8
876,826 + Synpcc7942_0874 0.80 +2.2
876,826 + Synpcc7942_0874 0.80 -2.0
876,852 + Synpcc7942_0874 0.80 +0.2
876,865 - Synpcc7942_0874 0.81 -1.0
876,887 + Synpcc7942_0874 0.82 +0.5
876,897 + Synpcc7942_0874 0.82 +1.2
876,905 - Synpcc7942_0874 0.82 +0.7
876,920 - Synpcc7942_0874 0.83 -2.4
876,958 - Synpcc7942_0874 0.84 -2.6
877,000 - Synpcc7942_0874 0.85 -0.4
877,015 - Synpcc7942_0874 0.86 -1.4
877,071 + Synpcc7942_0874 0.88 -0.6
877,076 + Synpcc7942_0874 0.88 -0.4
877,079 - Synpcc7942_0874 0.88 -1.1
877,079 - Synpcc7942_0874 0.88 -1.4
877,081 + Synpcc7942_0874 0.88 -1.4
877,088 + Synpcc7942_0874 0.88 -1.7
877,096 - Synpcc7942_0874 0.88 -2.3
877,156 + -0.7
877,166 - +1.6
877,175 + -4.1
877,175 + -1.0
877,175 + -0.4
877,175 + -0.6
877,175 + -0.2
877,183 - -0.2
877,183 - +0.2
877,183 - -2.0
877,183 - -2.1
877,183 - -0.6
877,209 - -0.8
877,216 - -1.8
877,219 + -1.2
877,250 - -3.4
877,290 - -2.1
877,340 + +0.2
877,421 - -2.8
877,433 + +0.2
877,435 + -2.6
877,440 + +0.0
877,443 - -2.1
877,445 + -0.4
877,445 + -0.5
877,445 + +0.2
877,453 - +1.0
877,453 - +1.0
877,453 - -1.1
877,469 + +0.8
877,475 + -1.6
877,487 - -0.5
877,565 - Synpcc7942_0875 0.26 -1.4
877,567 - Synpcc7942_0875 0.26 -0.1
877,572 + Synpcc7942_0875 0.27 +1.4
877,605 + Synpcc7942_0875 0.35 -1.8
877,605 + Synpcc7942_0875 0.35 -3.0
877,605 + Synpcc7942_0875 0.35 -1.3
877,605 + Synpcc7942_0875 0.35 -0.8
877,605 + Synpcc7942_0875 0.35 -0.1
877,605 + Synpcc7942_0875 0.35 -1.4
877,605 + Synpcc7942_0875 0.35 -0.4
877,605 + Synpcc7942_0875 0.35 -1.4
877,605 + Synpcc7942_0875 0.35 -1.4
877,613 - Synpcc7942_0875 0.37 +1.2
877,613 - Synpcc7942_0875 0.37 -0.4
877,613 - Synpcc7942_0875 0.37 -1.1
877,613 - Synpcc7942_0875 0.37 -2.8
877,613 - Synpcc7942_0875 0.37 -2.1
877,613 - Synpcc7942_0875 0.37 -3.7
877,613 - Synpcc7942_0875 0.37 -2.5
877,618 + Synpcc7942_0875 0.38 -0.8
877,631 - Synpcc7942_0875 0.41 -1.0
877,632 - Synpcc7942_0875 0.41 +0.2
877,636 + Synpcc7942_0875 0.42 -0.8
877,644 - Synpcc7942_0875 0.44 -0.1
877,679 + Synpcc7942_0875 0.52 -1.1
877,679 + Synpcc7942_0875 0.52 -0.1
877,687 - Synpcc7942_0875 0.54 +1.2
877,687 - Synpcc7942_0875 0.54 -0.1
877,714 + Synpcc7942_0875 0.60 -0.1
877,737 - Synpcc7942_0875 0.65 +0.9
877,737 - Synpcc7942_0875 0.65 -0.8
877,761 + Synpcc7942_0875 0.71 -2.6
877,761 + Synpcc7942_0875 0.71 -0.4
877,761 + Synpcc7942_0875 0.71 -2.6
877,769 - Synpcc7942_0875 0.73 -0.9
877,788 - Synpcc7942_0875 0.77 -0.7
877,788 - Synpcc7942_0875 0.77 +1.8
877,828 - Synpcc7942_0875 0.86 -1.3
877,841 - Synpcc7942_0875 0.89 -2.1
877,858 - +0.6
877,899 - -0.7
877,907 - -2.0
877,927 + -1.4
877,931 - -2.4
877,980 + -0.8
878,049 - -2.1
878,059 + +1.8

Or see this region's nucleotide sequence