Experiment: D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0598 and tRNA-Met are separated by 242 nucleotides tRNA-Met and Synpcc7942_0599 are separated by 14 nucleotides Synpcc7942_0599 and prkE are separated by 123 nucleotides
Synpcc7942_0598: Synpcc7942_0598 - Peptidoglycan-binding LysM, at 585,701 to 587,473
_0598
Synpcc7942_R0035: tRNA-Met - tRNA-Met, at 587,716 to 587,787
tRNA-Met
Synpcc7942_0599: Synpcc7942_0599 - putative transcriptional regulator, TetR family, at 587,802 to 588,404
_0599
Synpcc7942_0600: prkE - serine/threonine protein kinase, at 588,528 to 590,060
prkE
Position (kb) 587
588
589 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 587.492 kb on - strand at 587.538 kb on - strand at 587.575 kb on - strand at 587.575 kb on - strand at 587.576 kb on - strand at 587.600 kb on + strand at 587.602 kb on + strand at 587.610 kb on - strand at 587.626 kb on + strand at 587.626 kb on + strand at 587.626 kb on + strand at 587.626 kb on + strand at 587.626 kb on + strand at 587.627 kb on - strand at 587.634 kb on - strand at 587.634 kb on - strand at 587.634 kb on - strand at 587.642 kb on - strand at 587.803 kb on + strand at 587.831 kb on - strand at 587.924 kb on - strand at 587.938 kb on - strand, within Synpcc7942_0599 at 587.946 kb on - strand, within Synpcc7942_0599 at 587.958 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.963 kb on + strand, within Synpcc7942_0599 at 587.966 kb on - strand, within Synpcc7942_0599 at 587.966 kb on - strand, within Synpcc7942_0599 at 587.971 kb on - strand, within Synpcc7942_0599 at 587.971 kb on - strand, within Synpcc7942_0599 at 588.028 kb on + strand, within Synpcc7942_0599 at 588.089 kb on + strand, within Synpcc7942_0599 at 588.089 kb on + strand, within Synpcc7942_0599 at 588.096 kb on + strand, within Synpcc7942_0599 at 588.096 kb on + strand, within Synpcc7942_0599 at 588.099 kb on - strand, within Synpcc7942_0599 at 588.104 kb on - strand, within Synpcc7942_0599 at 588.104 kb on - strand, within Synpcc7942_0599 at 588.109 kb on - strand, within Synpcc7942_0599 at 588.109 kb on - strand, within Synpcc7942_0599 at 588.112 kb on + strand, within Synpcc7942_0599 at 588.143 kb on - strand, within Synpcc7942_0599 at 588.143 kb on - strand, within Synpcc7942_0599 at 588.148 kb on - strand, within Synpcc7942_0599 at 588.152 kb on + strand at 588.194 kb on + strand, within Synpcc7942_0599 at 588.201 kb on + strand, within Synpcc7942_0599 at 588.308 kb on + strand, within Synpcc7942_0599 at 588.323 kb on - strand, within Synpcc7942_0599 at 588.341 kb on - strand, within Synpcc7942_0599 at 588.379 kb on - strand at 588.379 kb on - strand at 588.408 kb on + strand at 588.431 kb on - strand at 588.435 kb on - strand at 588.435 kb on - strand at 588.444 kb on + strand at 588.444 kb on + strand at 588.446 kb on + strand at 588.452 kb on - strand at 588.459 kb on + strand at 588.466 kb on - strand at 588.476 kb on - strand at 588.476 kb on - strand at 588.493 kb on + strand at 588.494 kb on + strand at 588.494 kb on + strand at 588.538 kb on + strand at 588.545 kb on + strand at 588.548 kb on + strand at 588.555 kb on + strand at 588.555 kb on + strand at 588.558 kb on - strand at 588.558 kb on - strand at 588.560 kb on + strand at 588.560 kb on + strand at 588.560 kb on + strand at 588.563 kb on - strand at 588.563 kb on - strand at 588.566 kb on - strand at 588.568 kb on - strand at 588.568 kb on - strand at 588.568 kb on - strand at 588.569 kb on - strand at 588.603 kb on + strand at 588.633 kb on + strand at 588.634 kb on - strand at 588.654 kb on + strand at 588.654 kb on + strand at 588.654 kb on + strand at 588.667 kb on - strand at 588.684 kb on + strand, within prkE at 588.693 kb on - strand, within prkE at 588.693 kb on - strand, within prkE at 588.708 kb on + strand, within prkE at 588.715 kb on - strand, within prkE at 588.739 kb on - strand, within prkE at 588.778 kb on - strand, within prkE at 588.812 kb on + strand, within prkE at 588.840 kb on + strand, within prkE at 588.848 kb on - strand, within prkE at 588.853 kb on - strand, within prkE at 588.861 kb on + strand, within prkE at 588.866 kb on + strand, within prkE at 588.869 kb on - strand, within prkE at 588.869 kb on - strand, within prkE at 588.874 kb on - strand, within prkE at 588.874 kb on - strand, within prkE at 588.874 kb on - strand, within prkE at 588.877 kb on + strand, within prkE at 588.895 kb on - strand, within prkE at 588.899 kb on + strand, within prkE at 588.899 kb on + strand at 588.899 kb on + strand, within prkE at 588.907 kb on + strand, within prkE at 588.907 kb on - strand, within prkE at 588.907 kb on - strand, within prkE at 588.908 kb on - strand, within prkE at 588.915 kb on - strand, within prkE at 588.919 kb on + strand, within prkE at 588.975 kb on + strand, within prkE at 588.978 kb on + strand, within prkE at 589.001 kb on + strand, within prkE at 589.005 kb on + strand, within prkE at 589.050 kb on + strand, within prkE at 589.058 kb on - strand, within prkE at 589.068 kb on + strand, within prkE at 589.080 kb on + strand, within prkE at 589.109 kb on + strand, within prkE at 589.115 kb on - strand, within prkE at 589.119 kb on + strand, within prkE at 589.119 kb on - strand, within prkE at 589.127 kb on - strand, within prkE at 589.140 kb on + strand, within prkE at 589.140 kb on + strand, within prkE at 589.140 kb on + strand, within prkE at 589.147 kb on + strand, within prkE at 589.148 kb on - strand, within prkE at 589.148 kb on - strand, within prkE at 589.173 kb on + strand, within prkE at 589.204 kb on - strand, within prkE at 589.204 kb on - strand, within prkE at 589.206 kb on + strand, within prkE at 589.207 kb on + strand, within prkE at 589.214 kb on - strand, within prkE at 589.214 kb on - strand, within prkE at 589.234 kb on + strand, within prkE at 589.242 kb on - strand, within prkE at 589.289 kb on - strand, within prkE at 589.300 kb on + strand, within prkE at 589.301 kb on + strand, within prkE at 589.301 kb on + strand at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.309 kb on - strand, within prkE at 589.322 kb on + strand, within prkE at 589.347 kb on - strand, within prkE at 589.365 kb on + strand, within prkE at 589.371 kb on - strand, within prkE at 589.373 kb on - strand, within prkE at 589.382 kb on - strand, within prkE
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.0625 mg/ml remove 587,492 - +0.1 587,538 - +1.6 587,575 - +0.9 587,575 - +0.9 587,576 - +0.3 587,600 + -0.7 587,602 + -0.7 587,610 - -0.1 587,626 + +1.8 587,626 + +2.9 587,626 + +0.7 587,626 + +0.3 587,626 + -3.3 587,627 - +0.5 587,634 - +0.6 587,634 - +1.0 587,634 - +0.4 587,642 - -4.5 587,803 + +2.6 587,831 - +1.2 587,924 - -0.7 587,938 - Synpcc7942_0599 0.23 -2.5 587,946 - Synpcc7942_0599 0.24 -0.5 587,958 + Synpcc7942_0599 0.26 -0.4 587,963 + Synpcc7942_0599 0.27 -0.7 587,963 + Synpcc7942_0599 0.27 +1.0 587,963 + Synpcc7942_0599 0.27 +1.3 587,963 + Synpcc7942_0599 0.27 +0.3 587,963 + Synpcc7942_0599 0.27 +1.5 587,966 - Synpcc7942_0599 0.27 +1.4 587,966 - Synpcc7942_0599 0.27 -1.3 587,971 - Synpcc7942_0599 0.28 +0.2 587,971 - Synpcc7942_0599 0.28 +1.0 588,028 + Synpcc7942_0599 0.37 +1.3 588,089 + Synpcc7942_0599 0.48 +1.4 588,089 + Synpcc7942_0599 0.48 -0.3 588,096 + Synpcc7942_0599 0.49 -0.5 588,096 + Synpcc7942_0599 0.49 -0.0 588,099 - Synpcc7942_0599 0.49 +1.0 588,104 - Synpcc7942_0599 0.50 +2.6 588,104 - Synpcc7942_0599 0.50 +0.0 588,109 - Synpcc7942_0599 0.51 -0.7 588,109 - Synpcc7942_0599 0.51 +1.9 588,112 + Synpcc7942_0599 0.51 -1.3 588,143 - Synpcc7942_0599 0.57 +0.4 588,143 - Synpcc7942_0599 0.57 +0.3 588,148 - Synpcc7942_0599 0.57 -1.3 588,152 + -0.7 588,194 + Synpcc7942_0599 0.65 +1.3 588,201 + Synpcc7942_0599 0.66 +1.9 588,308 + Synpcc7942_0599 0.84 -0.4 588,323 - Synpcc7942_0599 0.86 -0.1 588,341 - Synpcc7942_0599 0.89 +1.1 588,379 - +1.3 588,379 - -1.5 588,408 + +0.0 588,431 - -0.2 588,435 - -0.5 588,435 - -0.4 588,444 + +1.3 588,444 + -0.7 588,446 + -1.3 588,452 - -1.1 588,459 + +0.0 588,466 - -1.7 588,476 - +0.6 588,476 - -1.7 588,493 + -0.7 588,494 + +0.8 588,494 + -0.8 588,538 + -0.8 588,545 + +0.2 588,548 + -1.0 588,555 + -2.5 588,555 + +1.0 588,558 - -1.3 588,558 - -0.1 588,560 + -1.7 588,560 + +1.6 588,560 + +0.7 588,563 - -0.2 588,563 - +1.9 588,566 - +0.3 588,568 - +1.3 588,568 - -1.7 588,568 - +0.3 588,569 - -1.7 588,603 + +0.5 588,633 + -1.4 588,634 - -0.1 588,654 + -0.3 588,654 + +0.3 588,654 + -0.2 588,667 - -3.4 588,684 + prkE Synpcc7942_0600 0.10 -2.9 588,693 - prkE Synpcc7942_0600 0.11 -1.1 588,693 - prkE Synpcc7942_0600 0.11 +1.6 588,708 + prkE Synpcc7942_0600 0.12 -0.6 588,715 - prkE Synpcc7942_0600 0.12 -0.2 588,739 - prkE Synpcc7942_0600 0.14 -0.1 588,778 - prkE Synpcc7942_0600 0.16 +0.5 588,812 + prkE Synpcc7942_0600 0.19 +0.3 588,840 + prkE Synpcc7942_0600 0.20 +0.3 588,848 - prkE Synpcc7942_0600 0.21 -0.5 588,853 - prkE Synpcc7942_0600 0.21 +1.3 588,861 + prkE Synpcc7942_0600 0.22 +2.9 588,866 + prkE Synpcc7942_0600 0.22 -0.1 588,869 - prkE Synpcc7942_0600 0.22 +0.1 588,869 - prkE Synpcc7942_0600 0.22 -0.1 588,874 - prkE Synpcc7942_0600 0.23 -1.1 588,874 - prkE Synpcc7942_0600 0.23 +0.3 588,874 - prkE Synpcc7942_0600 0.23 -2.9 588,877 + prkE Synpcc7942_0600 0.23 -2.1 588,895 - prkE Synpcc7942_0600 0.24 -0.2 588,899 + prkE Synpcc7942_0600 0.24 -1.7 588,899 + +3.4 588,899 + prkE Synpcc7942_0600 0.24 +3.2 588,907 + prkE Synpcc7942_0600 0.25 -0.7 588,907 - prkE Synpcc7942_0600 0.25 +0.5 588,907 - prkE Synpcc7942_0600 0.25 -0.1 588,908 - prkE Synpcc7942_0600 0.25 +0.2 588,915 - prkE Synpcc7942_0600 0.25 +0.7 588,919 + prkE Synpcc7942_0600 0.26 -0.0 588,975 + prkE Synpcc7942_0600 0.29 -0.3 588,978 + prkE Synpcc7942_0600 0.29 -1.6 589,001 + prkE Synpcc7942_0600 0.31 -4.5 589,005 + prkE Synpcc7942_0600 0.31 -0.5 589,050 + prkE Synpcc7942_0600 0.34 -0.2 589,058 - prkE Synpcc7942_0600 0.35 +0.1 589,068 + prkE Synpcc7942_0600 0.35 -0.5 589,080 + prkE Synpcc7942_0600 0.36 -2.7 589,109 + prkE Synpcc7942_0600 0.38 -2.4 589,115 - prkE Synpcc7942_0600 0.38 -1.1 589,119 + prkE Synpcc7942_0600 0.39 +0.3 589,119 - prkE Synpcc7942_0600 0.39 -2.1 589,127 - prkE Synpcc7942_0600 0.39 +0.3 589,140 + prkE Synpcc7942_0600 0.40 -0.4 589,140 + prkE Synpcc7942_0600 0.40 +2.1 589,140 + prkE Synpcc7942_0600 0.40 +2.9 589,147 + prkE Synpcc7942_0600 0.40 -0.0 589,148 - prkE Synpcc7942_0600 0.40 -1.4 589,148 - prkE Synpcc7942_0600 0.40 +0.1 589,173 + prkE Synpcc7942_0600 0.42 +2.7 589,204 - prkE Synpcc7942_0600 0.44 -0.3 589,204 - prkE Synpcc7942_0600 0.44 -2.7 589,206 + prkE Synpcc7942_0600 0.44 -0.2 589,207 + prkE Synpcc7942_0600 0.44 +0.9 589,214 - prkE Synpcc7942_0600 0.45 -0.4 589,214 - prkE Synpcc7942_0600 0.45 +0.2 589,234 + prkE Synpcc7942_0600 0.46 -0.3 589,242 - prkE Synpcc7942_0600 0.47 -1.5 589,289 - prkE Synpcc7942_0600 0.50 -0.2 589,300 + prkE Synpcc7942_0600 0.50 -1.1 589,301 + prkE Synpcc7942_0600 0.50 +0.3 589,301 + -0.7 589,309 - prkE Synpcc7942_0600 0.51 -0.7 589,309 - prkE Synpcc7942_0600 0.51 +0.9 589,309 - prkE Synpcc7942_0600 0.51 -2.5 589,309 - prkE Synpcc7942_0600 0.51 -1.7 589,322 + prkE Synpcc7942_0600 0.52 +0.3 589,347 - prkE Synpcc7942_0600 0.53 +0.3 589,365 + prkE Synpcc7942_0600 0.55 -0.1 589,371 - prkE Synpcc7942_0600 0.55 +1.7 589,373 - prkE Synpcc7942_0600 0.55 -1.7 589,382 - prkE Synpcc7942_0600 0.56 -0.7
Or see this region's nucleotide sequence