Experiment: D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aldA and Synpcc7942_0490 are separated by 350 nucleotides Synpcc7942_0490 and Synpcc7942_0491 are separated by 259 nucleotides Synpcc7942_0491 and ribF are separated by 39 nucleotides
Synpcc7942_0489: aldA - aldehyde dehydrogenase, at 475,665 to 477,044
aldA
Synpcc7942_0490: Synpcc7942_0490 - diguanylate cyclase with PAS/PAC sensor, at 477,395 to 479,440
_0490
Synpcc7942_0491: Synpcc7942_0491 - hypothetical protein, at 479,700 to 479,837
_0491
Synpcc7942_0492: ribF - bifunctional riboflavin kinase/FMN adenylyltransferase, at 479,877 to 480,824
ribF
Position (kb) 477
478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 476.399 kb on + strand, within aldA at 476.421 kb on + strand, within aldA at 476.478 kb on + strand, within aldA at 476.495 kb on + strand, within aldA at 476.498 kb on - strand, within aldA at 476.507 kb on - strand, within aldA at 476.541 kb on + strand, within aldA at 476.601 kb on + strand, within aldA at 476.614 kb on + strand, within aldA at 476.622 kb on - strand, within aldA at 476.637 kb on - strand, within aldA at 476.670 kb on - strand, within aldA at 476.672 kb on + strand, within aldA at 476.680 kb on + strand, within aldA at 476.685 kb on + strand, within aldA at 476.688 kb on - strand, within aldA at 476.692 kb on + strand, within aldA at 476.701 kb on - strand, within aldA at 476.710 kb on + strand, within aldA at 476.718 kb on - strand, within aldA at 476.728 kb on - strand, within aldA at 476.728 kb on - strand, within aldA at 476.730 kb on + strand, within aldA at 476.811 kb on - strand, within aldA at 476.833 kb on + strand, within aldA at 476.841 kb on - strand, within aldA at 476.847 kb on + strand, within aldA at 476.855 kb on - strand, within aldA at 476.874 kb on - strand, within aldA at 476.876 kb on + strand, within aldA at 476.876 kb on + strand, within aldA at 476.876 kb on + strand, within aldA at 476.897 kb on - strand, within aldA at 476.935 kb on + strand at 476.951 kb on + strand at 476.959 kb on - strand at 476.989 kb on - strand at 477.040 kb on - strand at 477.047 kb on - strand at 477.050 kb on - strand at 477.208 kb on + strand at 477.236 kb on + strand at 477.255 kb on + strand at 477.256 kb on - strand at 477.260 kb on + strand at 477.263 kb on - strand at 477.263 kb on - strand at 477.278 kb on - strand at 477.278 kb on - strand at 477.302 kb on + strand at 477.529 kb on + strand at 477.844 kb on - strand, within Synpcc7942_0490 at 477.882 kb on + strand, within Synpcc7942_0490 at 477.915 kb on + strand, within Synpcc7942_0490 at 478.057 kb on + strand, within Synpcc7942_0490 at 478.057 kb on - strand, within Synpcc7942_0490 at 478.065 kb on - strand, within Synpcc7942_0490 at 478.072 kb on + strand, within Synpcc7942_0490 at 478.080 kb on - strand, within Synpcc7942_0490 at 478.161 kb on - strand, within Synpcc7942_0490 at 478.219 kb on + strand, within Synpcc7942_0490 at 478.249 kb on + strand, within Synpcc7942_0490 at 478.303 kb on - strand, within Synpcc7942_0490 at 478.310 kb on - strand, within Synpcc7942_0490 at 478.360 kb on + strand, within Synpcc7942_0490 at 478.477 kb on + strand, within Synpcc7942_0490 at 478.477 kb on + strand, within Synpcc7942_0490 at 478.479 kb on + strand, within Synpcc7942_0490 at 478.485 kb on - strand, within Synpcc7942_0490 at 478.487 kb on - strand, within Synpcc7942_0490 at 478.507 kb on + strand, within Synpcc7942_0490 at 478.517 kb on + strand, within Synpcc7942_0490 at 478.525 kb on - strand, within Synpcc7942_0490 at 478.541 kb on - strand, within Synpcc7942_0490 at 478.564 kb on + strand, within Synpcc7942_0490 at 478.757 kb on - strand, within Synpcc7942_0490 at 478.769 kb on + strand, within Synpcc7942_0490 at 479.032 kb on - strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.123 kb on - strand, within Synpcc7942_0490 at 479.125 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.193 kb on - strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.271 kb on + strand at 479.312 kb on - strand at 479.346 kb on - strand at 479.392 kb on + strand at 479.473 kb on + strand at 479.473 kb on + strand at 479.620 kb on - strand at 479.655 kb on - strand at 479.658 kb on + strand at 479.666 kb on - strand at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.762 kb on + strand, within Synpcc7942_0491 at 479.770 kb on - strand, within Synpcc7942_0491 at 479.781 kb on - strand, within Synpcc7942_0491 at 479.788 kb on + strand, within Synpcc7942_0491 at 479.804 kb on + strand, within Synpcc7942_0491 at 479.811 kb on + strand, within Synpcc7942_0491 at 479.820 kb on - strand, within Synpcc7942_0491 at 479.832 kb on - strand at 479.849 kb on - strand at 479.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.0625 mg/ml remove 476,399 + aldA Synpcc7942_0489 0.53 +0.3 476,421 + aldA Synpcc7942_0489 0.55 +1.3 476,478 + aldA Synpcc7942_0489 0.59 -2.0 476,495 + aldA Synpcc7942_0489 0.60 -2.0 476,498 - aldA Synpcc7942_0489 0.60 -1.7 476,507 - aldA Synpcc7942_0489 0.61 +0.3 476,541 + aldA Synpcc7942_0489 0.63 +0.3 476,601 + aldA Synpcc7942_0489 0.68 -0.7 476,614 + aldA Synpcc7942_0489 0.69 -1.3 476,622 - aldA Synpcc7942_0489 0.69 -0.7 476,637 - aldA Synpcc7942_0489 0.70 -0.7 476,670 - aldA Synpcc7942_0489 0.73 -0.7 476,672 + aldA Synpcc7942_0489 0.73 -0.7 476,680 + aldA Synpcc7942_0489 0.74 -0.9 476,685 + aldA Synpcc7942_0489 0.74 +0.3 476,688 - aldA Synpcc7942_0489 0.74 -0.9 476,692 + aldA Synpcc7942_0489 0.74 -0.4 476,701 - aldA Synpcc7942_0489 0.75 -2.0 476,710 + aldA Synpcc7942_0489 0.76 -0.0 476,718 - aldA Synpcc7942_0489 0.76 -0.7 476,728 - aldA Synpcc7942_0489 0.77 -1.7 476,728 - aldA Synpcc7942_0489 0.77 +0.3 476,730 + aldA Synpcc7942_0489 0.77 +0.3 476,811 - aldA Synpcc7942_0489 0.83 -0.7 476,833 + aldA Synpcc7942_0489 0.85 -1.7 476,841 - aldA Synpcc7942_0489 0.85 -0.3 476,847 + aldA Synpcc7942_0489 0.86 -0.7 476,855 - aldA Synpcc7942_0489 0.86 +0.3 476,874 - aldA Synpcc7942_0489 0.88 -0.1 476,876 + aldA Synpcc7942_0489 0.88 +0.3 476,876 + aldA Synpcc7942_0489 0.88 +0.9 476,876 + aldA Synpcc7942_0489 0.88 +0.1 476,897 - aldA Synpcc7942_0489 0.89 +0.3 476,935 + -0.1 476,951 + -2.3 476,959 - +1.3 476,989 - -0.7 477,040 - -0.4 477,047 - -0.6 477,050 - -1.3 477,208 + +1.4 477,236 + -1.7 477,255 + -2.3 477,256 - +0.8 477,260 + -1.4 477,263 - -2.7 477,263 - -0.7 477,278 - +3.3 477,278 - +0.2 477,302 + -1.7 477,529 + +0.4 477,844 - Synpcc7942_0490 0.22 -2.3 477,882 + Synpcc7942_0490 0.24 -0.0 477,915 + Synpcc7942_0490 0.25 +0.3 478,057 + Synpcc7942_0490 0.32 -1.3 478,057 - Synpcc7942_0490 0.32 +2.3 478,065 - Synpcc7942_0490 0.33 -1.0 478,072 + Synpcc7942_0490 0.33 -0.4 478,080 - Synpcc7942_0490 0.33 +2.1 478,161 - Synpcc7942_0490 0.37 -2.3 478,219 + Synpcc7942_0490 0.40 +0.3 478,249 + Synpcc7942_0490 0.42 +0.4 478,303 - Synpcc7942_0490 0.44 +0.1 478,310 - Synpcc7942_0490 0.45 +0.7 478,360 + Synpcc7942_0490 0.47 +3.1 478,477 + Synpcc7942_0490 0.53 +0.7 478,477 + Synpcc7942_0490 0.53 +0.1 478,479 + Synpcc7942_0490 0.53 -0.2 478,485 - Synpcc7942_0490 0.53 +1.1 478,487 - Synpcc7942_0490 0.53 +0.5 478,507 + Synpcc7942_0490 0.54 +0.8 478,517 + Synpcc7942_0490 0.55 -0.3 478,525 - Synpcc7942_0490 0.55 +0.3 478,541 - Synpcc7942_0490 0.56 +0.0 478,564 + Synpcc7942_0490 0.57 +1.9 478,757 - Synpcc7942_0490 0.67 +0.9 478,769 + Synpcc7942_0490 0.67 -0.0 479,032 - Synpcc7942_0490 0.80 -1.9 479,116 + Synpcc7942_0490 0.84 +0.0 479,116 + Synpcc7942_0490 0.84 -0.4 479,123 - Synpcc7942_0490 0.84 -0.6 479,125 + Synpcc7942_0490 0.85 +1.0 479,185 + Synpcc7942_0490 0.87 -0.7 479,185 + Synpcc7942_0490 0.87 +0.2 479,185 + Synpcc7942_0490 0.87 -0.3 479,193 - Synpcc7942_0490 0.88 -2.5 479,220 + Synpcc7942_0490 0.89 -1.0 479,220 + Synpcc7942_0490 0.89 -0.2 479,271 + +3.1 479,312 - -1.5 479,346 - -1.1 479,392 + -0.5 479,473 + +1.5 479,473 + +1.8 479,620 - +2.2 479,655 - -2.7 479,658 + -0.3 479,666 - -0.7 479,737 - Synpcc7942_0491 0.27 -1.5 479,737 - Synpcc7942_0491 0.27 -1.3 479,737 - Synpcc7942_0491 0.27 +1.2 479,737 - Synpcc7942_0491 0.27 -0.0 479,762 + Synpcc7942_0491 0.45 +1.0 479,770 - Synpcc7942_0491 0.51 +0.5 479,781 - Synpcc7942_0491 0.59 -1.1 479,788 + Synpcc7942_0491 0.64 -0.8 479,804 + Synpcc7942_0491 0.75 +1.3 479,811 + Synpcc7942_0491 0.80 +0.3 479,820 - Synpcc7942_0491 0.87 -1.5 479,832 - +0.8 479,849 - +4.1 479,899 + -3.0
Or see this region's nucleotide sequence