Experiment: D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0119 and Synpcc7942_0120 are separated by 215 nucleotides Synpcc7942_0120 and Synpcc7942_0121 are separated by 19 nucleotides Synpcc7942_0121 and tRNA-Cys are separated by 42 nucleotides tRNA-Cys and Synpcc7942_0122 are separated by 478 nucleotides
Synpcc7942_0119: Synpcc7942_0119 - hypothetical protein, at 118,735 to 119,292
_0119
Synpcc7942_0120: Synpcc7942_0120 - Cytosine/adenosine deaminase-like, at 119,508 to 119,993
_0120
Synpcc7942_0121: Synpcc7942_0121 - hypothetical protein, at 120,013 to 121,239
_0121
Synpcc7942_R0026: tRNA-Cys - tRNA-Cys, at 121,282 to 121,352
tRNA-Cys
Synpcc7942_0122: Synpcc7942_0122 - EAL, at 121,831 to 123,408
_0122
Position (kb)
120
121
122 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 119.071 kb on - strand, within Synpcc7942_0119 at 119.071 kb on - strand, within Synpcc7942_0119 at 119.080 kb on + strand at 119.220 kb on + strand, within Synpcc7942_0119 at 119.230 kb on - strand, within Synpcc7942_0119 at 119.240 kb on + strand at 119.375 kb on + strand at 119.397 kb on - strand at 119.401 kb on + strand at 119.401 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.408 kb on + strand at 119.413 kb on + strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.416 kb on - strand at 119.423 kb on + strand at 119.423 kb on + strand at 119.446 kb on + strand at 119.446 kb on + strand at 119.446 kb on + strand at 119.447 kb on + strand at 119.454 kb on - strand at 119.454 kb on - strand at 119.465 kb on - strand at 119.465 kb on - strand at 119.512 kb on - strand at 119.512 kb on - strand at 119.539 kb on - strand at 119.606 kb on - strand, within Synpcc7942_0120 at 119.631 kb on - strand, within Synpcc7942_0120 at 119.657 kb on - strand, within Synpcc7942_0120 at 119.731 kb on + strand, within Synpcc7942_0120 at 119.739 kb on - strand, within Synpcc7942_0120 at 119.748 kb on + strand, within Synpcc7942_0120 at 119.748 kb on + strand, within Synpcc7942_0120 at 119.748 kb on + strand, within Synpcc7942_0120 at 119.748 kb on + strand, within Synpcc7942_0120 at 119.756 kb on - strand, within Synpcc7942_0120 at 119.756 kb on - strand, within Synpcc7942_0120 at 119.756 kb on - strand, within Synpcc7942_0120 at 119.756 kb on - strand, within Synpcc7942_0120 at 119.756 kb on - strand, within Synpcc7942_0120 at 119.756 kb on - strand, within Synpcc7942_0120 at 119.756 kb on - strand, within Synpcc7942_0120 at 119.787 kb on - strand, within Synpcc7942_0120 at 119.795 kb on - strand, within Synpcc7942_0120 at 119.845 kb on + strand, within Synpcc7942_0120 at 119.845 kb on + strand, within Synpcc7942_0120 at 119.853 kb on - strand, within Synpcc7942_0120 at 119.857 kb on - strand, within Synpcc7942_0120 at 119.882 kb on - strand, within Synpcc7942_0120 at 119.899 kb on - strand, within Synpcc7942_0120 at 119.901 kb on + strand, within Synpcc7942_0120 at 119.901 kb on + strand, within Synpcc7942_0120 at 119.909 kb on - strand, within Synpcc7942_0120 at 119.909 kb on - strand, within Synpcc7942_0120 at 119.995 kb on + strand at 120.014 kb on - strand at 120.046 kb on - strand at 121.254 kb on + strand at 121.399 kb on - strand at 121.410 kb on + strand at 121.418 kb on - strand at 121.496 kb on + strand at 121.837 kb on - strand at 121.837 kb on - strand at 121.841 kb on + strand at 121.841 kb on + strand at 121.849 kb on - strand at 121.910 kb on + strand at 122.136 kb on - strand, within Synpcc7942_0122 at 122.218 kb on - strand, within Synpcc7942_0122
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.0625 mg/ml remove 119,071 - Synpcc7942_0119 0.60 -1.1 119,071 - Synpcc7942_0119 0.60 -1.8 119,080 + -1.4 119,220 + Synpcc7942_0119 0.87 +1.8 119,230 - Synpcc7942_0119 0.89 -0.4 119,240 + -2.1 119,375 + -2.1 119,397 - +1.8 119,401 + -1.4 119,401 + -0.2 119,408 + -1.4 119,408 + +0.2 119,408 + +0.9 119,408 + +1.8 119,408 + -0.8 119,408 + +0.9 119,408 + -0.8 119,408 + -0.3 119,408 + -1.6 119,408 + -0.8 119,408 + +1.8 119,413 + +0.2 119,416 - +0.2 119,416 - -0.4 119,416 - +0.6 119,416 - +0.2 119,416 - +1.7 119,416 - +1.1 119,416 - +0.2 119,416 - -1.1 119,416 - -0.8 119,416 - +0.6 119,416 - +0.6 119,423 + -1.1 119,423 + +1.9 119,446 + -2.4 119,446 + -1.2 119,446 + -2.2 119,447 + -1.8 119,454 - +0.1 119,454 - -2.3 119,465 - -2.1 119,465 - -1.8 119,512 - -0.4 119,512 - -1.1 119,539 - +0.2 119,606 - Synpcc7942_0120 0.20 +0.2 119,631 - Synpcc7942_0120 0.25 +0.2 119,657 - Synpcc7942_0120 0.31 +0.5 119,731 + Synpcc7942_0120 0.46 +0.4 119,739 - Synpcc7942_0120 0.48 -0.2 119,748 + Synpcc7942_0120 0.49 -1.1 119,748 + Synpcc7942_0120 0.49 -3.8 119,748 + Synpcc7942_0120 0.49 -1.1 119,748 + Synpcc7942_0120 0.49 -2.4 119,756 - Synpcc7942_0120 0.51 -0.2 119,756 - Synpcc7942_0120 0.51 +1.3 119,756 - Synpcc7942_0120 0.51 -1.4 119,756 - Synpcc7942_0120 0.51 -0.9 119,756 - Synpcc7942_0120 0.51 +0.8 119,756 - Synpcc7942_0120 0.51 +0.5 119,756 - Synpcc7942_0120 0.51 +0.8 119,787 - Synpcc7942_0120 0.57 +0.6 119,795 - Synpcc7942_0120 0.59 -1.8 119,845 + Synpcc7942_0120 0.69 -1.1 119,845 + Synpcc7942_0120 0.69 -2.1 119,853 - Synpcc7942_0120 0.71 -0.4 119,857 - Synpcc7942_0120 0.72 +0.5 119,882 - Synpcc7942_0120 0.77 +3.4 119,899 - Synpcc7942_0120 0.80 -1.0 119,901 + Synpcc7942_0120 0.81 -2.9 119,901 + Synpcc7942_0120 0.81 +1.6 119,909 - Synpcc7942_0120 0.83 -1.1 119,909 - Synpcc7942_0120 0.83 +1.2 119,995 + -2.8 120,014 - +0.8 120,046 - -2.2 121,254 + -0.2 121,399 - +1.8 121,410 + +1.8 121,418 - +2.0 121,496 + +0.5 121,837 - -0.4 121,837 - -0.1 121,841 + +1.2 121,841 + +0.2 121,849 - +1.4 121,910 + +0.5 122,136 - Synpcc7942_0122 0.19 -1.5 122,218 - Synpcc7942_0122 0.25 +1.2
Or see this region's nucleotide sequence