Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06515

Experiment: Iron limitation (0.2x), formate media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06510 and MMJJ_RS06515 are separated by 42 nucleotidesMMJJ_RS06515 and MMJJ_RS06520 are separated by 51 nucleotides MMJJ_RS06510: MMJJ_RS06510 - LL-diaminopimelate aminotransferase, at 1,200,426 to 1,201,676 _RS06510 MMJJ_RS06515: MMJJ_RS06515 - ribonuclease III, at 1,201,719 to 1,202,408 _RS06515 MMJJ_RS06520: MMJJ_RS06520 - TldD/PmbA family protein, at 1,202,460 to 1,203,722 _RS06520 Position (kb) 1201 1202 1203Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1200.734 kb on + strand, within MMJJ_RS06510at 1200.752 kb on + strand, within MMJJ_RS06510at 1200.787 kb on + strand, within MMJJ_RS06510at 1200.791 kb on - strand, within MMJJ_RS06510at 1201.086 kb on - strand, within MMJJ_RS06510at 1201.681 kb on - strandat 1201.716 kb on + strandat 1201.743 kb on - strandat 1201.811 kb on - strand, within MMJJ_RS06515at 1201.883 kb on + strand, within MMJJ_RS06515at 1201.977 kb on - strand, within MMJJ_RS06515at 1201.978 kb on + strand, within MMJJ_RS06515at 1201.978 kb on + strand, within MMJJ_RS06515at 1201.985 kb on - strand, within MMJJ_RS06515at 1201.986 kb on + strand, within MMJJ_RS06515at 1201.986 kb on + strand, within MMJJ_RS06515at 1201.987 kb on - strand, within MMJJ_RS06515at 1201.987 kb on - strand, within MMJJ_RS06515at 1201.987 kb on - strand, within MMJJ_RS06515at 1201.988 kb on + strand, within MMJJ_RS06515at 1201.990 kb on + strand, within MMJJ_RS06515at 1201.990 kb on + strand, within MMJJ_RS06515at 1202.022 kb on - strand, within MMJJ_RS06515at 1202.023 kb on + strand, within MMJJ_RS06515at 1202.094 kb on - strand, within MMJJ_RS06515at 1202.095 kb on + strand, within MMJJ_RS06515at 1202.115 kb on - strand, within MMJJ_RS06515at 1202.115 kb on - strand, within MMJJ_RS06515at 1202.115 kb on - strand, within MMJJ_RS06515at 1202.116 kb on + strand, within MMJJ_RS06515at 1202.116 kb on + strand, within MMJJ_RS06515at 1202.116 kb on + strand, within MMJJ_RS06515at 1202.119 kb on - strand, within MMJJ_RS06515at 1202.119 kb on - strand, within MMJJ_RS06515at 1202.147 kb on + strand, within MMJJ_RS06515at 1202.147 kb on + strand, within MMJJ_RS06515at 1202.173 kb on - strand, within MMJJ_RS06515at 1202.174 kb on + strand, within MMJJ_RS06515at 1202.174 kb on + strand, within MMJJ_RS06515at 1202.174 kb on + strand, within MMJJ_RS06515at 1202.230 kb on - strand, within MMJJ_RS06515at 1202.231 kb on + strand, within MMJJ_RS06515at 1202.241 kb on - strand, within MMJJ_RS06515at 1202.241 kb on - strand, within MMJJ_RS06515at 1202.242 kb on + strand, within MMJJ_RS06515at 1202.242 kb on + strand, within MMJJ_RS06515at 1202.242 kb on + strand, within MMJJ_RS06515at 1202.242 kb on + strand, within MMJJ_RS06515at 1202.244 kb on - strand, within MMJJ_RS06515at 1202.245 kb on + strand, within MMJJ_RS06515at 1202.269 kb on - strand, within MMJJ_RS06515at 1202.270 kb on + strand, within MMJJ_RS06515at 1202.285 kb on - strand, within MMJJ_RS06515at 1202.298 kb on + strand, within MMJJ_RS06515at 1202.316 kb on - strand, within MMJJ_RS06515at 1202.316 kb on - strand, within MMJJ_RS06515at 1202.317 kb on + strand, within MMJJ_RS06515at 1202.317 kb on + strand, within MMJJ_RS06515at 1202.317 kb on + strand, within MMJJ_RS06515at 1202.321 kb on + strand, within MMJJ_RS06515at 1202.321 kb on + strand, within MMJJ_RS06515at 1202.334 kb on + strand, within MMJJ_RS06515at 1202.334 kb on + strand, within MMJJ_RS06515at 1202.352 kb on + strandat 1202.355 kb on - strandat 1202.355 kb on - strandat 1202.364 kb on + strandat 1202.370 kb on - strandat 1202.370 kb on - strandat 1202.370 kb on - strandat 1202.371 kb on + strandat 1202.371 kb on + strandat 1202.371 kb on + strandat 1202.426 kb on - strandat 1202.440 kb on + strandat 1202.443 kb on - strandat 1202.443 kb on - strandat 1202.525 kb on - strandat 1202.547 kb on - strandat 1202.561 kb on - strandat 1202.561 kb on - strandat 1202.617 kb on - strand, within MMJJ_RS06520at 1202.651 kb on - strand, within MMJJ_RS06520at 1202.652 kb on + strand, within MMJJ_RS06520at 1202.666 kb on - strand, within MMJJ_RS06520at 1202.667 kb on + strand, within MMJJ_RS06520at 1202.679 kb on - strand, within MMJJ_RS06520at 1202.680 kb on + strand, within MMJJ_RS06520at 1202.693 kb on + strand, within MMJJ_RS06520at 1202.693 kb on + strand, within MMJJ_RS06520at 1202.698 kb on - strand, within MMJJ_RS06520at 1202.699 kb on + strand, within MMJJ_RS06520at 1202.736 kb on - strand, within MMJJ_RS06520at 1202.736 kb on - strand, within MMJJ_RS06520at 1202.742 kb on + strand, within MMJJ_RS06520at 1202.742 kb on + strand, within MMJJ_RS06520at 1202.814 kb on + strand, within MMJJ_RS06520at 1202.828 kb on - strand, within MMJJ_RS06520at 1202.839 kb on - strand, within MMJJ_RS06520at 1202.840 kb on + strand, within MMJJ_RS06520at 1202.865 kb on + strand, within MMJJ_RS06520at 1202.901 kb on - strand, within MMJJ_RS06520at 1202.967 kb on - strand, within MMJJ_RS06520at 1202.967 kb on - strand, within MMJJ_RS06520at 1202.968 kb on + strand, within MMJJ_RS06520at 1203.026 kb on - strand, within MMJJ_RS06520at 1203.027 kb on + strand, within MMJJ_RS06520at 1203.038 kb on - strand, within MMJJ_RS06520at 1203.038 kb on - strand, within MMJJ_RS06520at 1203.039 kb on + strand, within MMJJ_RS06520at 1203.051 kb on - strand, within MMJJ_RS06520at 1203.086 kb on - strand, within MMJJ_RS06520at 1203.136 kb on + strand, within MMJJ_RS06520at 1203.136 kb on + strand, within MMJJ_RS06520at 1203.187 kb on - strand, within MMJJ_RS06520at 1203.236 kb on + strand, within MMJJ_RS06520at 1203.238 kb on - strand, within MMJJ_RS06520at 1203.347 kb on - strand, within MMJJ_RS06520at 1203.348 kb on + strand, within MMJJ_RS06520

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Per-strain Table

Position Strand Gene LocusTag Fraction Iron limitation (0.2x), formate media
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1,200,734 + MMJJ_RS06510 0.25 -3.1
1,200,752 + MMJJ_RS06510 0.26 -2.3
1,200,787 + MMJJ_RS06510 0.29 -3.8
1,200,791 - MMJJ_RS06510 0.29 -2.5
1,201,086 - MMJJ_RS06510 0.53 -1.0
1,201,681 - +1.3
1,201,716 + +0.6
1,201,743 - +1.2
1,201,811 - MMJJ_RS06515 0.13 +0.4
1,201,883 + MMJJ_RS06515 0.24 +0.6
1,201,977 - MMJJ_RS06515 0.37 -3.3
1,201,978 + MMJJ_RS06515 0.38 -0.7
1,201,978 + MMJJ_RS06515 0.38 +0.9
1,201,985 - MMJJ_RS06515 0.39 +0.4
1,201,986 + MMJJ_RS06515 0.39 +0.9
1,201,986 + MMJJ_RS06515 0.39 +1.0
1,201,987 - MMJJ_RS06515 0.39 +1.3
1,201,987 - MMJJ_RS06515 0.39 +0.2
1,201,987 - MMJJ_RS06515 0.39 +0.3
1,201,988 + MMJJ_RS06515 0.39 +0.7
1,201,990 + MMJJ_RS06515 0.39 -0.3
1,201,990 + MMJJ_RS06515 0.39 -3.5
1,202,022 - MMJJ_RS06515 0.44 -0.7
1,202,023 + MMJJ_RS06515 0.44 +1.0
1,202,094 - MMJJ_RS06515 0.54 +0.8
1,202,095 + MMJJ_RS06515 0.54 +1.4
1,202,115 - MMJJ_RS06515 0.57 +0.3
1,202,115 - MMJJ_RS06515 0.57 +0.1
1,202,115 - MMJJ_RS06515 0.57 +0.6
1,202,116 + MMJJ_RS06515 0.58 +0.6
1,202,116 + MMJJ_RS06515 0.58 +0.0
1,202,116 + MMJJ_RS06515 0.58 -0.2
1,202,119 - MMJJ_RS06515 0.58 +0.6
1,202,119 - MMJJ_RS06515 0.58 +0.6
1,202,147 + MMJJ_RS06515 0.62 +1.1
1,202,147 + MMJJ_RS06515 0.62 -0.3
1,202,173 - MMJJ_RS06515 0.66 -3.4
1,202,174 + MMJJ_RS06515 0.66 +0.6
1,202,174 + MMJJ_RS06515 0.66 -0.1
1,202,174 + MMJJ_RS06515 0.66 +1.1
1,202,230 - MMJJ_RS06515 0.74 +0.7
1,202,231 + MMJJ_RS06515 0.74 +1.4
1,202,241 - MMJJ_RS06515 0.76 -0.8
1,202,241 - MMJJ_RS06515 0.76 +0.4
1,202,242 + MMJJ_RS06515 0.76 +1.2
1,202,242 + MMJJ_RS06515 0.76 +0.4
1,202,242 + MMJJ_RS06515 0.76 +0.5
1,202,242 + MMJJ_RS06515 0.76 +1.0
1,202,244 - MMJJ_RS06515 0.76 -0.1
1,202,245 + MMJJ_RS06515 0.76 +1.0
1,202,269 - MMJJ_RS06515 0.80 +1.5
1,202,270 + MMJJ_RS06515 0.80 -1.3
1,202,285 - MMJJ_RS06515 0.82 -1.1
1,202,298 + MMJJ_RS06515 0.84 +1.0
1,202,316 - MMJJ_RS06515 0.87 +0.3
1,202,316 - MMJJ_RS06515 0.87 +0.3
1,202,317 + MMJJ_RS06515 0.87 +0.7
1,202,317 + MMJJ_RS06515 0.87 +0.2
1,202,317 + MMJJ_RS06515 0.87 +0.7
1,202,321 + MMJJ_RS06515 0.87 -0.2
1,202,321 + MMJJ_RS06515 0.87 +0.4
1,202,334 + MMJJ_RS06515 0.89 +0.8
1,202,334 + MMJJ_RS06515 0.89 +0.4
1,202,352 + +0.5
1,202,355 - +0.1
1,202,355 - +1.2
1,202,364 + +1.1
1,202,370 - +0.1
1,202,370 - -0.1
1,202,370 - -0.3
1,202,371 + -1.3
1,202,371 + +1.5
1,202,371 + +0.5
1,202,426 - +0.2
1,202,440 + +0.5
1,202,443 - +0.0
1,202,443 - +0.1
1,202,525 - +0.6
1,202,547 - -0.1
1,202,561 - -0.2
1,202,561 - +0.5
1,202,617 - MMJJ_RS06520 0.12 +0.2
1,202,651 - MMJJ_RS06520 0.15 +0.1
1,202,652 + MMJJ_RS06520 0.15 -1.1
1,202,666 - MMJJ_RS06520 0.16 -0.5
1,202,667 + MMJJ_RS06520 0.16 -0.1
1,202,679 - MMJJ_RS06520 0.17 +0.3
1,202,680 + MMJJ_RS06520 0.17 +0.4
1,202,693 + MMJJ_RS06520 0.18 -0.0
1,202,693 + MMJJ_RS06520 0.18 -0.2
1,202,698 - MMJJ_RS06520 0.19 +0.5
1,202,699 + MMJJ_RS06520 0.19 -0.3
1,202,736 - MMJJ_RS06520 0.22 +0.8
1,202,736 - MMJJ_RS06520 0.22 +0.6
1,202,742 + MMJJ_RS06520 0.22 -0.2
1,202,742 + MMJJ_RS06520 0.22 +0.0
1,202,814 + MMJJ_RS06520 0.28 +0.1
1,202,828 - MMJJ_RS06520 0.29 +0.4
1,202,839 - MMJJ_RS06520 0.30 +1.8
1,202,840 + MMJJ_RS06520 0.30 +0.7
1,202,865 + MMJJ_RS06520 0.32 +1.0
1,202,901 - MMJJ_RS06520 0.35 -0.1
1,202,967 - MMJJ_RS06520 0.40 +0.9
1,202,967 - MMJJ_RS06520 0.40 +1.0
1,202,968 + MMJJ_RS06520 0.40 -0.6
1,203,026 - MMJJ_RS06520 0.45 -1.6
1,203,027 + MMJJ_RS06520 0.45 +0.9
1,203,038 - MMJJ_RS06520 0.46 -0.1
1,203,038 - MMJJ_RS06520 0.46 +0.8
1,203,039 + MMJJ_RS06520 0.46 -0.1
1,203,051 - MMJJ_RS06520 0.47 +0.3
1,203,086 - MMJJ_RS06520 0.50 -0.3
1,203,136 + MMJJ_RS06520 0.54 -0.3
1,203,136 + MMJJ_RS06520 0.54 +1.3
1,203,187 - MMJJ_RS06520 0.58 +0.3
1,203,236 + MMJJ_RS06520 0.61 +1.0
1,203,238 - MMJJ_RS06520 0.62 -1.1
1,203,347 - MMJJ_RS06520 0.70 -0.3
1,203,348 + MMJJ_RS06520 0.70 +0.6

Or see this region's nucleotide sequence