Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05681

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05679 and H281DRAFT_05680 are separated by 1 nucleotidesH281DRAFT_05680 and H281DRAFT_05681 are separated by 212 nucleotidesH281DRAFT_05681 and H281DRAFT_05682 are separated by 151 nucleotides H281DRAFT_05679: H281DRAFT_05679 - SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase, at 95,388 to 96,230 _05679 H281DRAFT_05680: H281DRAFT_05680 - hypothetical protein, at 96,232 to 96,786 _05680 H281DRAFT_05681: H281DRAFT_05681 - transcriptional regulator, TetR family, at 96,999 to 97,667 _05681 H281DRAFT_05682: H281DRAFT_05682 - Sugar phosphate permease, at 97,819 to 99,102 _05682 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1at 96.020 kb on + strand, within H281DRAFT_05679at 96.020 kb on + strand, within H281DRAFT_05679at 96.021 kb on - strand, within H281DRAFT_05679at 96.245 kb on - strandat 96.249 kb on + strandat 96.299 kb on + strand, within H281DRAFT_05680at 96.300 kb on - strand, within H281DRAFT_05680at 96.300 kb on - strand, within H281DRAFT_05680at 96.342 kb on + strand, within H281DRAFT_05680at 96.342 kb on + strand, within H281DRAFT_05680at 96.342 kb on + strand, within H281DRAFT_05680at 96.343 kb on - strand, within H281DRAFT_05680at 96.393 kb on - strand, within H281DRAFT_05680at 96.393 kb on - strand, within H281DRAFT_05680at 96.393 kb on - strand, within H281DRAFT_05680at 96.432 kb on - strand, within H281DRAFT_05680at 96.517 kb on - strand, within H281DRAFT_05680at 96.518 kb on + strand, within H281DRAFT_05680at 96.518 kb on + strand, within H281DRAFT_05680at 96.519 kb on - strand, within H281DRAFT_05680at 96.519 kb on - strand, within H281DRAFT_05680at 96.519 kb on - strand, within H281DRAFT_05680at 96.535 kb on + strand, within H281DRAFT_05680at 96.536 kb on - strand, within H281DRAFT_05680at 96.564 kb on + strand, within H281DRAFT_05680at 96.565 kb on - strand, within H281DRAFT_05680at 96.718 kb on + strand, within H281DRAFT_05680at 96.719 kb on - strand, within H281DRAFT_05680at 96.827 kb on + strandat 96.959 kb on + strandat 96.959 kb on + strandat 96.959 kb on + strandat 96.959 kb on + strandat 96.960 kb on - strandat 96.961 kb on + strandat 96.961 kb on + strandat 96.961 kb on + strandat 96.961 kb on + strandat 96.962 kb on - strandat 96.962 kb on - strandat 96.962 kb on - strandat 96.962 kb on - strandat 97.035 kb on - strandat 97.087 kb on + strand, within H281DRAFT_05681at 97.088 kb on - strand, within H281DRAFT_05681at 97.105 kb on + strand, within H281DRAFT_05681at 97.105 kb on + strand, within H281DRAFT_05681at 97.176 kb on + strand, within H281DRAFT_05681at 97.177 kb on - strand, within H281DRAFT_05681at 97.328 kb on - strand, within H281DRAFT_05681at 97.328 kb on - strand, within H281DRAFT_05681at 97.384 kb on + strand, within H281DRAFT_05681at 97.417 kb on + strand, within H281DRAFT_05681at 97.418 kb on - strand, within H281DRAFT_05681at 97.456 kb on + strand, within H281DRAFT_05681at 97.634 kb on + strandat 97.770 kb on + strandat 97.841 kb on + strandat 97.841 kb on + strandat 98.009 kb on + strand, within H281DRAFT_05682at 98.010 kb on - strand, within H281DRAFT_05682at 98.010 kb on - strand, within H281DRAFT_05682at 98.011 kb on + strand, within H281DRAFT_05682at 98.012 kb on - strand, within H281DRAFT_05682at 98.012 kb on - strand, within H281DRAFT_05682at 98.012 kb on - strand, within H281DRAFT_05682at 98.018 kb on + strand, within H281DRAFT_05682at 98.323 kb on + strand, within H281DRAFT_05682at 98.431 kb on + strand, within H281DRAFT_05682at 98.432 kb on - strand, within H281DRAFT_05682at 98.621 kb on - strand, within H281DRAFT_05682

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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96,020 + H281DRAFT_05679 0.75 +1.1
96,020 + H281DRAFT_05679 0.75 -0.3
96,021 - H281DRAFT_05679 0.75 -0.1
96,245 - +0.7
96,249 + +0.4
96,299 + H281DRAFT_05680 0.12 +0.3
96,300 - H281DRAFT_05680 0.12 -0.2
96,300 - H281DRAFT_05680 0.12 +0.5
96,342 + H281DRAFT_05680 0.20 +0.0
96,342 + H281DRAFT_05680 0.20 +0.4
96,342 + H281DRAFT_05680 0.20 -0.6
96,343 - H281DRAFT_05680 0.20 +0.3
96,393 - H281DRAFT_05680 0.29 -0.5
96,393 - H281DRAFT_05680 0.29 -0.4
96,393 - H281DRAFT_05680 0.29 -0.1
96,432 - H281DRAFT_05680 0.36 -0.7
96,517 - H281DRAFT_05680 0.51 -0.2
96,518 + H281DRAFT_05680 0.52 +0.4
96,518 + H281DRAFT_05680 0.52 -0.1
96,519 - H281DRAFT_05680 0.52 +0.5
96,519 - H281DRAFT_05680 0.52 -0.8
96,519 - H281DRAFT_05680 0.52 +0.1
96,535 + H281DRAFT_05680 0.55 -0.1
96,536 - H281DRAFT_05680 0.55 +1.3
96,564 + H281DRAFT_05680 0.60 -0.1
96,565 - H281DRAFT_05680 0.60 +0.1
96,718 + H281DRAFT_05680 0.88 -1.9
96,719 - H281DRAFT_05680 0.88 +0.2
96,827 + -0.2
96,959 + -0.2
96,959 + -0.1
96,959 + -0.2
96,959 + -0.1
96,960 - -1.5
96,961 + +0.1
96,961 + +0.4
96,961 + +0.5
96,961 + +0.1
96,962 - +0.2
96,962 - +0.5
96,962 - +0.4
96,962 - +0.7
97,035 - -0.5
97,087 + H281DRAFT_05681 0.13 +0.1
97,088 - H281DRAFT_05681 0.13 -0.3
97,105 + H281DRAFT_05681 0.16 -0.9
97,105 + H281DRAFT_05681 0.16 -2.6
97,176 + H281DRAFT_05681 0.26 +1.1
97,177 - H281DRAFT_05681 0.27 -0.5
97,328 - H281DRAFT_05681 0.49 -1.0
97,328 - H281DRAFT_05681 0.49 -0.7
97,384 + H281DRAFT_05681 0.58 -1.5
97,417 + H281DRAFT_05681 0.62 +1.1
97,418 - H281DRAFT_05681 0.63 -1.8
97,456 + H281DRAFT_05681 0.68 +0.1
97,634 + +1.1
97,770 + -0.0
97,841 + -0.2
97,841 + +0.3
98,009 + H281DRAFT_05682 0.15 +0.7
98,010 - H281DRAFT_05682 0.15 +0.7
98,010 - H281DRAFT_05682 0.15 +0.0
98,011 + H281DRAFT_05682 0.15 +0.8
98,012 - H281DRAFT_05682 0.15 +1.7
98,012 - H281DRAFT_05682 0.15 -0.7
98,012 - H281DRAFT_05682 0.15 -0.4
98,018 + H281DRAFT_05682 0.15 -0.5
98,323 + H281DRAFT_05682 0.39 +0.0
98,431 + H281DRAFT_05682 0.48 +0.4
98,432 - H281DRAFT_05682 0.48 +0.5
98,621 - H281DRAFT_05682 0.62 +0.4

Or see this region's nucleotide sequence