Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03683

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03682 and H281DRAFT_03683 are separated by 136 nucleotidesH281DRAFT_03683 and H281DRAFT_03684 are separated by 107 nucleotidesH281DRAFT_03684 and H281DRAFT_03685 are separated by 39 nucleotides H281DRAFT_03682: H281DRAFT_03682 - hypothetical protein, at 196,854 to 197,798 _03682 H281DRAFT_03683: H281DRAFT_03683 - transcriptional regulator, LysR family, at 197,935 to 198,801 _03683 H281DRAFT_03684: H281DRAFT_03684 - Protein N-acetyltransferase, RimJ/RimL family, at 198,909 to 199,448 _03684 H281DRAFT_03685: H281DRAFT_03685 - Protein N-acetyltransferase, RimJ/RimL family, at 199,488 to 200,225 _03685 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1at 196.957 kb on + strand, within H281DRAFT_03682at 196.957 kb on + strand, within H281DRAFT_03682at 197.127 kb on - strand, within H281DRAFT_03682at 197.476 kb on + strand, within H281DRAFT_03682at 197.477 kb on - strand, within H281DRAFT_03682at 197.541 kb on + strand, within H281DRAFT_03682at 197.541 kb on + strand, within H281DRAFT_03682at 197.545 kb on - strand, within H281DRAFT_03682at 197.755 kb on - strandat 198.244 kb on + strand, within H281DRAFT_03683at 198.244 kb on + strand, within H281DRAFT_03683at 198.246 kb on + strand, within H281DRAFT_03683at 198.495 kb on - strand, within H281DRAFT_03683at 198.495 kb on - strand, within H281DRAFT_03683at 198.878 kb on + strandat 198.878 kb on + strandat 198.952 kb on + strandat 199.074 kb on + strand, within H281DRAFT_03684at 199.168 kb on - strand, within H281DRAFT_03684at 199.395 kb on + strandat 199.395 kb on + strandat 199.395 kb on + strandat 199.396 kb on - strandat 199.396 kb on - strandat 199.467 kb on + strandat 199.467 kb on + strandat 199.478 kb on - strandat 199.481 kb on + strandat 199.482 kb on - strandat 199.594 kb on + strand, within H281DRAFT_03685at 199.666 kb on + strand, within H281DRAFT_03685at 199.700 kb on + strand, within H281DRAFT_03685at 199.701 kb on - strand, within H281DRAFT_03685at 199.701 kb on - strand, within H281DRAFT_03685at 199.701 kb on - strand, within H281DRAFT_03685at 199.792 kb on + strand, within H281DRAFT_03685at 199.792 kb on + strand, within H281DRAFT_03685at 199.792 kb on + strand, within H281DRAFT_03685at 199.792 kb on + strand, within H281DRAFT_03685at 199.793 kb on - strand, within H281DRAFT_03685at 199.793 kb on - strand, within H281DRAFT_03685

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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196,957 + H281DRAFT_03682 0.11 -0.7
196,957 + H281DRAFT_03682 0.11 +1.1
197,127 - H281DRAFT_03682 0.29 +0.7
197,476 + H281DRAFT_03682 0.66 +0.2
197,477 - H281DRAFT_03682 0.66 -0.3
197,541 + H281DRAFT_03682 0.73 +0.0
197,541 + H281DRAFT_03682 0.73 -0.3
197,545 - H281DRAFT_03682 0.73 -2.3
197,755 - +0.5
198,244 + H281DRAFT_03683 0.36 +0.5
198,244 + H281DRAFT_03683 0.36 -0.3
198,246 + H281DRAFT_03683 0.36 +0.8
198,495 - H281DRAFT_03683 0.65 +0.6
198,495 - H281DRAFT_03683 0.65 +0.9
198,878 + +0.7
198,878 + +0.8
198,952 + +0.0
199,074 + H281DRAFT_03684 0.31 -0.2
199,168 - H281DRAFT_03684 0.48 -0.2
199,395 + +0.3
199,395 + -0.2
199,395 + +1.0
199,396 - -0.3
199,396 - +0.1
199,467 + -0.5
199,467 + -0.1
199,478 - -0.2
199,481 + -0.4
199,482 - -0.5
199,594 + H281DRAFT_03685 0.14 -0.2
199,666 + H281DRAFT_03685 0.24 -0.4
199,700 + H281DRAFT_03685 0.29 +0.2
199,701 - H281DRAFT_03685 0.29 +1.5
199,701 - H281DRAFT_03685 0.29 +0.8
199,701 - H281DRAFT_03685 0.29 +0.7
199,792 + H281DRAFT_03685 0.41 -0.1
199,792 + H281DRAFT_03685 0.41 -0.2
199,792 + H281DRAFT_03685 0.41 +0.0
199,792 + H281DRAFT_03685 0.41 +0.6
199,793 - H281DRAFT_03685 0.41 -0.3
199,793 - H281DRAFT_03685 0.41 +0.0

Or see this region's nucleotide sequence