Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01409

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01408 and H281DRAFT_01409 are separated by 179 nucleotidesH281DRAFT_01409 and H281DRAFT_01410 are separated by 3 nucleotides H281DRAFT_01408: H281DRAFT_01408 - hypothetical protein, at 261,593 to 262,450 _01408 H281DRAFT_01409: H281DRAFT_01409 - acetate kinase, at 262,630 to 263,811 _01409 H281DRAFT_01410: H281DRAFT_01410 - phosphate acetyltransferase, at 263,815 to 264,750 _01410 Position (kb) 262 263 264Strain fitness (log2 ratio) -1 0 1at 261.811 kb on + strand, within H281DRAFT_01408at 261.851 kb on + strand, within H281DRAFT_01408at 261.972 kb on + strand, within H281DRAFT_01408at 262.433 kb on + strandat 262.434 kb on - strandat 262.719 kb on + strandat 262.907 kb on + strand, within H281DRAFT_01409at 263.428 kb on - strand, within H281DRAFT_01409at 264.305 kb on - strand, within H281DRAFT_01410at 264.729 kb on - strandat 264.741 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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261,811 + H281DRAFT_01408 0.25 -0.1
261,851 + H281DRAFT_01408 0.30 -0.4
261,972 + H281DRAFT_01408 0.44 +0.6
262,433 + +0.9
262,434 - -0.0
262,719 + -0.7
262,907 + H281DRAFT_01409 0.23 +0.5
263,428 - H281DRAFT_01409 0.68 +0.7
264,305 - H281DRAFT_01410 0.52 +0.6
264,729 - +0.6
264,741 + -0.3

Or see this region's nucleotide sequence