Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01305

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01303 and H281DRAFT_01304 are separated by 103 nucleotidesH281DRAFT_01304 and H281DRAFT_01305 are separated by 91 nucleotidesH281DRAFT_01305 and H281DRAFT_01306 are separated by 69 nucleotides H281DRAFT_01303: H281DRAFT_01303 - triphosphoribosyl-dephospho-CoA synthase, at 142,030 to 142,968 _01303 H281DRAFT_01304: H281DRAFT_01304 - formaldehyde activating enzyme, at 143,072 to 143,581 _01304 H281DRAFT_01305: H281DRAFT_01305 - hypothetical protein, at 143,673 to 144,080 _01305 H281DRAFT_01306: H281DRAFT_01306 - dihydroneopterin aldolase, at 144,150 to 144,686 _01306 Position (kb) 143 144 145Strain fitness (log2 ratio) -1 0 1 2 3at 142.804 kb on - strand, within H281DRAFT_01303at 142.804 kb on - strandat 143.468 kb on + strand, within H281DRAFT_01304at 143.475 kb on - strand, within H281DRAFT_01304at 143.681 kb on - strandat 143.811 kb on + strand, within H281DRAFT_01305at 143.904 kb on + strand, within H281DRAFT_01305at 143.940 kb on + strand, within H281DRAFT_01305at 144.015 kb on - strand, within H281DRAFT_01305at 144.355 kb on - strand, within H281DRAFT_01306at 144.522 kb on + strand, within H281DRAFT_01306at 144.524 kb on + strand, within H281DRAFT_01306at 144.617 kb on + strand, within H281DRAFT_01306

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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142,804 - H281DRAFT_01303 0.82 +0.2
142,804 - +3.0
143,468 + H281DRAFT_01304 0.78 -0.0
143,475 - H281DRAFT_01304 0.79 -0.3
143,681 - -0.3
143,811 + H281DRAFT_01305 0.34 +1.2
143,904 + H281DRAFT_01305 0.57 +1.0
143,940 + H281DRAFT_01305 0.65 -0.1
144,015 - H281DRAFT_01305 0.84 +1.5
144,355 - H281DRAFT_01306 0.38 +1.1
144,522 + H281DRAFT_01306 0.69 +0.3
144,524 + H281DRAFT_01306 0.70 +0.6
144,617 + H281DRAFT_01306 0.87 -1.5

Or see this region's nucleotide sequence