Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00731

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00730 and H281DRAFT_00731 overlap by 4 nucleotidesH281DRAFT_00731 and H281DRAFT_00732 are separated by 47 nucleotides H281DRAFT_00730: H281DRAFT_00730 - Glycosyltransferase involved in cell wall bisynthesis, at 823,088 to 824,266 _00730 H281DRAFT_00731: H281DRAFT_00731 - Glycosyltransferase involved in cell wall bisynthesis, at 824,263 to 825,420 _00731 H281DRAFT_00732: H281DRAFT_00732 - hypothetical protein, at 825,468 to 827,876 _00732 Position (kb) 824 825 826Strain fitness (log2 ratio) -1 0 1 2 3at 824.192 kb on + strandat 824.359 kb on - strandat 824.523 kb on + strand, within H281DRAFT_00731at 824.758 kb on + strand, within H281DRAFT_00731at 824.969 kb on + strand, within H281DRAFT_00731at 825.340 kb on + strandat 825.395 kb on - strandat 825.687 kb on + strandat 825.710 kb on + strand, within H281DRAFT_00732at 825.720 kb on + strand, within H281DRAFT_00732at 825.791 kb on + strand, within H281DRAFT_00732at 825.919 kb on - strand, within H281DRAFT_00732at 825.925 kb on - strand, within H281DRAFT_00732at 826.007 kb on + strand, within H281DRAFT_00732

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
remove
824,192 + +0.7
824,359 - -0.2
824,523 + H281DRAFT_00731 0.22 +0.1
824,758 + H281DRAFT_00731 0.43 +3.1
824,969 + H281DRAFT_00731 0.61 +0.6
825,340 + +0.2
825,395 - +0.5
825,687 + +1.6
825,710 + H281DRAFT_00732 0.10 +0.6
825,720 + H281DRAFT_00732 0.10 +0.5
825,791 + H281DRAFT_00732 0.13 -0.4
825,919 - H281DRAFT_00732 0.19 +1.1
825,925 - H281DRAFT_00732 0.19 -0.1
826,007 + H281DRAFT_00732 0.22 -1.3

Or see this region's nucleotide sequence