Experiment: 2-Deoxy-D-Ribose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00378 and H281DRAFT_00379 are separated by 60 nucleotides H281DRAFT_00379 and H281DRAFT_00380 are separated by 126 nucleotides
H281DRAFT_00378: H281DRAFT_00378 - glutamate synthase (NADPH/NADH) small chain, at 416,554 to 417,903
_00378
H281DRAFT_00379: H281DRAFT_00379 - dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+), at 417,964 to 419,292
_00379
H281DRAFT_00380: H281DRAFT_00380 - nucleobase:cation symporter-1, NCS1 family, at 419,419 to 420,930
_00380
Position (kb) 417
418
419
420 Strain fitness (log2 ratio) -2
-1
0
1 at 417.112 kb on + strand, within H281DRAFT_00378 at 418.964 kb on - strand, within H281DRAFT_00379 at 419.241 kb on - strand at 419.325 kb on + strand at 419.326 kb on - strand at 419.404 kb on - strand at 419.534 kb on - strand at 419.534 kb on - strand at 419.613 kb on + strand, within H281DRAFT_00380 at 419.614 kb on - strand, within H281DRAFT_00380 at 419.648 kb on + strand, within H281DRAFT_00380 at 419.837 kb on - strand, within H281DRAFT_00380 at 419.951 kb on - strand, within H281DRAFT_00380 at 419.951 kb on - strand, within H281DRAFT_00380 at 419.968 kb on - strand, within H281DRAFT_00380
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C) remove 417,112 + H281DRAFT_00378 0.41 -2.0 418,964 - H281DRAFT_00379 0.75 +0.9 419,241 - -0.2 419,325 + -0.4 419,326 - +1.0 419,404 - +1.1 419,534 - +1.2 419,534 - -1.0 419,613 + H281DRAFT_00380 0.13 +0.3 419,614 - H281DRAFT_00380 0.13 +0.1 419,648 + H281DRAFT_00380 0.15 -0.9 419,837 - H281DRAFT_00380 0.28 -0.1 419,951 - H281DRAFT_00380 0.35 +0.2 419,951 - H281DRAFT_00380 0.35 +1.2 419,968 - H281DRAFT_00380 0.36 -0.3
Or see this region's nucleotide sequence