Strain Fitness in Dechlorosoma suillum PS around Dsui_3506

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3504 and Dsui_3505 overlap by 1 nucleotidesDsui_3505 and Dsui_3506 are separated by 93 nucleotidesDsui_3506 and Dsui_3507 are separated by 110 nucleotides Dsui_3504: Dsui_3504 - rhodanese-related sulfurtransferase, at 3,769,664 to 3,770,512 _3504 Dsui_3505: Dsui_3505 - Protein of unknown function (DUF3478), at 3,770,512 to 3,770,868 _3505 Dsui_3506: Dsui_3506 - putative permease, DMT superfamily, at 3,770,962 to 3,771,819 _3506 Dsui_3507: Dsui_3507 - ring-hydroxylating dioxygenase, large terminal subunit, at 3,771,930 to 3,773,039 _3507 Position (kb) 3770 3771 3772Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3770.225 kb on + strand, within Dsui_3504at 3770.376 kb on + strandat 3770.411 kb on + strand, within Dsui_3504at 3770.478 kb on - strandat 3770.616 kb on - strand, within Dsui_3505at 3770.627 kb on - strand, within Dsui_3505at 3770.669 kb on + strand, within Dsui_3505at 3770.709 kb on - strand, within Dsui_3505at 3770.720 kb on + strandat 3770.784 kb on + strand, within Dsui_3505at 3770.793 kb on + strand, within Dsui_3505at 3770.801 kb on - strand, within Dsui_3505at 3770.801 kb on - strand, within Dsui_3505at 3770.839 kb on - strandat 3770.845 kb on + strandat 3770.871 kb on - strandat 3770.872 kb on - strandat 3770.877 kb on - strandat 3770.877 kb on - strandat 3770.877 kb on - strandat 3770.877 kb on - strandat 3770.877 kb on - strandat 3770.928 kb on + strandat 3770.936 kb on - strandat 3770.960 kb on + strandat 3770.960 kb on + strandat 3770.991 kb on - strandat 3771.147 kb on - strand, within Dsui_3506at 3771.180 kb on - strand, within Dsui_3506at 3771.207 kb on + strand, within Dsui_3506at 3771.297 kb on - strand, within Dsui_3506at 3771.297 kb on - strand, within Dsui_3506at 3771.319 kb on + strand, within Dsui_3506at 3771.324 kb on + strandat 3771.347 kb on - strand, within Dsui_3506at 3771.441 kb on + strandat 3771.493 kb on + strand, within Dsui_3506at 3771.523 kb on - strand, within Dsui_3506at 3771.617 kb on + strandat 3771.652 kb on - strand, within Dsui_3506at 3771.654 kb on + strandat 3771.662 kb on + strandat 3771.666 kb on + strandat 3771.673 kb on - strand, within Dsui_3506at 3771.690 kb on + strand, within Dsui_3506at 3771.729 kb on + strandat 3771.776 kb on - strandat 3771.950 kb on - strandat 3771.977 kb on + strandat 3772.038 kb on - strandat 3772.058 kb on - strand, within Dsui_3507at 3772.135 kb on - strand, within Dsui_3507at 3772.146 kb on - strand, within Dsui_3507at 3772.156 kb on + strand, within Dsui_3507at 3772.161 kb on + strand, within Dsui_3507at 3772.232 kb on - strand, within Dsui_3507at 3772.333 kb on - strand, within Dsui_3507at 3772.346 kb on - strand, within Dsui_3507at 3772.361 kb on + strandat 3772.367 kb on + strandat 3772.393 kb on + strand, within Dsui_3507at 3772.429 kb on - strand, within Dsui_3507at 3772.477 kb on + strandat 3772.486 kb on - strand, within Dsui_3507at 3772.592 kb on + strand, within Dsui_3507at 3772.605 kb on - strand, within Dsui_3507at 3772.618 kb on + strand, within Dsui_3507at 3772.669 kb on - strand, within Dsui_3507at 3772.696 kb on + strand, within Dsui_3507at 3772.754 kb on + strand, within Dsui_3507at 3772.765 kb on + strandat 3772.767 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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3,770,225 + Dsui_3504 0.66 -0.4
3,770,376 + -2.1
3,770,411 + Dsui_3504 0.88 -1.3
3,770,478 - +1.2
3,770,616 - Dsui_3505 0.29 +1.1
3,770,627 - Dsui_3505 0.32 +1.3
3,770,669 + Dsui_3505 0.44 -1.9
3,770,709 - Dsui_3505 0.55 +0.3
3,770,720 + -1.5
3,770,784 + Dsui_3505 0.76 -0.5
3,770,793 + Dsui_3505 0.79 +0.2
3,770,801 - Dsui_3505 0.81 +1.0
3,770,801 - Dsui_3505 0.81 +1.1
3,770,839 - +1.4
3,770,845 + +1.5
3,770,871 - -1.0
3,770,872 - +1.7
3,770,877 - +0.2
3,770,877 - +1.0
3,770,877 - +0.6
3,770,877 - +0.4
3,770,877 - +0.5
3,770,928 + -1.7
3,770,936 - +1.3
3,770,960 + -0.4
3,770,960 + -2.0
3,770,991 - -3.5
3,771,147 - Dsui_3506 0.22 -2.0
3,771,180 - Dsui_3506 0.25 -1.8
3,771,207 + Dsui_3506 0.29 -4.7
3,771,297 - Dsui_3506 0.39 -4.2
3,771,297 - Dsui_3506 0.39 -1.5
3,771,319 + Dsui_3506 0.42 -3.0
3,771,324 + -1.5
3,771,347 - Dsui_3506 0.45 -4.2
3,771,441 + +0.0
3,771,493 + Dsui_3506 0.62 -2.1
3,771,523 - Dsui_3506 0.65 -4.3
3,771,617 + -3.0
3,771,652 - Dsui_3506 0.80 -3.6
3,771,654 + -2.5
3,771,662 + -1.8
3,771,666 + -2.5
3,771,673 - Dsui_3506 0.83 -3.8
3,771,690 + Dsui_3506 0.85 -4.7
3,771,729 + -3.4
3,771,776 - -2.4
3,771,950 - +1.4
3,771,977 + -3.5
3,772,038 - +1.0
3,772,058 - Dsui_3507 0.12 +0.8
3,772,135 - Dsui_3507 0.18 +1.4
3,772,146 - Dsui_3507 0.19 +1.8
3,772,156 + Dsui_3507 0.20 -0.9
3,772,161 + Dsui_3507 0.21 +0.5
3,772,232 - Dsui_3507 0.27 +1.0
3,772,333 - Dsui_3507 0.36 +2.2
3,772,346 - Dsui_3507 0.37 +0.7
3,772,361 + +1.6
3,772,367 + -0.1
3,772,393 + Dsui_3507 0.42 -0.6
3,772,429 - Dsui_3507 0.45 +1.0
3,772,477 + +1.6
3,772,486 - Dsui_3507 0.50 +0.8
3,772,592 + Dsui_3507 0.60 -3.5
3,772,605 - Dsui_3507 0.61 +1.0
3,772,618 + Dsui_3507 0.62 +0.4
3,772,669 - Dsui_3507 0.67 +0.4
3,772,696 + Dsui_3507 0.69 +1.6
3,772,754 + Dsui_3507 0.74 -0.3
3,772,765 + -2.0
3,772,767 + +0.6

Or see this region's nucleotide sequence