Strain Fitness in Dechlorosoma suillum PS around Dsui_2500

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2497 and Dsui_2498 are separated by 16 nucleotidesDsui_2498 and Dsui_2499 overlap by 4 nucleotidesDsui_2499 and Dsui_2500 are separated by 52 nucleotidesDsui_2500 and Dsui_2501 are separated by 112 nucleotides Dsui_2497: Dsui_2497 - mercuric reductase, at 2,645,125 to 2,646,771 _2497 Dsui_2498: Dsui_2498 - mercuric resistance transcriptional repressor protein MerD, at 2,646,788 to 2,647,153 _2498 Dsui_2499: Dsui_2499 - MerE protein, at 2,647,150 to 2,647,386 _2499 Dsui_2500: Dsui_2500 - site-specific recombinase, DNA invertase Pin, at 2,647,439 to 2,648,053 _2500 Dsui_2501: Dsui_2501 - TniQ protein, at 2,648,166 to 2,649,332 _2501 Position (kb) 2647 2648 2649Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2646.490 kb on - strand, within Dsui_2497at 2646.803 kb on - strandat 2646.852 kb on + strand, within Dsui_2498at 2646.876 kb on + strand, within Dsui_2498at 2646.908 kb on - strandat 2646.908 kb on - strand, within Dsui_2498at 2646.942 kb on - strand, within Dsui_2498at 2646.979 kb on - strand, within Dsui_2498at 2647.155 kb on - strandat 2647.222 kb on + strand, within Dsui_2499at 2647.227 kb on + strand, within Dsui_2499at 2647.235 kb on - strand, within Dsui_2499at 2647.299 kb on + strand, within Dsui_2499at 2647.307 kb on - strandat 2647.324 kb on - strandat 2647.474 kb on - strandat 2647.692 kb on + strand, within Dsui_2500at 2647.748 kb on + strand, within Dsui_2500at 2647.769 kb on + strand, within Dsui_2500at 2647.777 kb on - strand, within Dsui_2500at 2647.798 kb on + strandat 2647.800 kb on + strandat 2647.823 kb on - strand, within Dsui_2500at 2648.008 kb on + strandat 2648.016 kb on - strandat 2648.016 kb on - strandat 2648.016 kb on - strandat 2648.016 kb on - strandat 2648.016 kb on - strandat 2648.231 kb on + strandat 2648.239 kb on - strandat 2648.352 kb on + strand, within Dsui_2501at 2648.419 kb on + strand, within Dsui_2501at 2648.495 kb on + strand, within Dsui_2501at 2648.643 kb on - strandat 2648.643 kb on - strand, within Dsui_2501at 2648.646 kb on + strand, within Dsui_2501

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,646,490 - Dsui_2497 0.83 -0.8
2,646,803 - +0.9
2,646,852 + Dsui_2498 0.17 +0.9
2,646,876 + Dsui_2498 0.24 +0.6
2,646,908 - -2.0
2,646,908 - Dsui_2498 0.33 +0.0
2,646,942 - Dsui_2498 0.42 -0.5
2,646,979 - Dsui_2498 0.52 +1.3
2,647,155 - -0.3
2,647,222 + Dsui_2499 0.30 +0.5
2,647,227 + Dsui_2499 0.32 +0.1
2,647,235 - Dsui_2499 0.36 +1.2
2,647,299 + Dsui_2499 0.63 -3.2
2,647,307 - -1.2
2,647,324 - -1.4
2,647,474 - +1.2
2,647,692 + Dsui_2500 0.41 +1.0
2,647,748 + Dsui_2500 0.50 -0.3
2,647,769 + Dsui_2500 0.54 -2.3
2,647,777 - Dsui_2500 0.55 +1.3
2,647,798 + -1.0
2,647,800 + -2.5
2,647,823 - Dsui_2500 0.62 +0.9
2,648,008 + -4.7
2,648,016 - +1.6
2,648,016 - +1.4
2,648,016 - +0.8
2,648,016 - +1.3
2,648,016 - +1.2
2,648,231 + -1.4
2,648,239 - -2.2
2,648,352 + Dsui_2501 0.16 -1.4
2,648,419 + Dsui_2501 0.22 +0.6
2,648,495 + Dsui_2501 0.28 -1.3
2,648,643 - -0.4
2,648,643 - Dsui_2501 0.41 -1.3
2,648,646 + Dsui_2501 0.41 -0.7

Or see this region's nucleotide sequence