Strain Fitness in Dechlorosoma suillum PS around Dsui_2455

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2453 and Dsui_2454 are separated by 112 nucleotidesDsui_2454 and Dsui_2455 are separated by 30 nucleotidesDsui_2455 and Dsui_2456 overlap by 14 nucleotidesDsui_2456 and Dsui_2457 are separated by 56 nucleotides Dsui_2453: Dsui_2453 - RNA polymerase sigma factor RpoE, at 2,612,122 to 2,612,721 _2453 Dsui_2454: Dsui_2454 - Positive regulator of sigma E activity, at 2,612,834 to 2,613,265 _2454 Dsui_2455: Dsui_2455 - periplasmic serine protease, Do/DeqQ family, at 2,613,296 to 2,614,741 _2455 Dsui_2456: Dsui_2456 - Glutaredoxin-like domain (DUF836), at 2,614,728 to 2,615,000 _2456 Dsui_2457: Dsui_2457 - GTP-binding protein LepA, at 2,615,057 to 2,616,850 _2457 Position (kb) 2613 2614 2615Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2612.786 kb on + strandat 2612.786 kb on + strandat 2612.818 kb on + strandat 2612.916 kb on + strand, within Dsui_2454at 2612.916 kb on + strand, within Dsui_2454at 2612.916 kb on + strand, within Dsui_2454at 2613.137 kb on + strand, within Dsui_2454at 2613.211 kb on + strand, within Dsui_2454at 2613.211 kb on + strand, within Dsui_2454at 2613.245 kb on + strandat 2613.274 kb on + strandat 2613.402 kb on + strandat 2613.402 kb on + strandat 2613.426 kb on + strandat 2613.437 kb on - strandat 2613.456 kb on - strand, within Dsui_2455at 2613.478 kb on + strand, within Dsui_2455at 2613.617 kb on + strand, within Dsui_2455at 2613.617 kb on + strand, within Dsui_2455at 2613.636 kb on + strand, within Dsui_2455at 2613.705 kb on + strand, within Dsui_2455at 2613.733 kb on + strand, within Dsui_2455at 2613.792 kb on + strand, within Dsui_2455at 2613.792 kb on + strand, within Dsui_2455at 2613.792 kb on + strand, within Dsui_2455at 2613.792 kb on + strand, within Dsui_2455at 2613.794 kb on + strand, within Dsui_2455at 2613.902 kb on + strand, within Dsui_2455at 2613.903 kb on + strand, within Dsui_2455at 2613.907 kb on + strand, within Dsui_2455at 2614.159 kb on + strand, within Dsui_2455at 2614.167 kb on - strandat 2614.231 kb on + strand, within Dsui_2455at 2614.248 kb on + strand, within Dsui_2455at 2614.275 kb on + strand, within Dsui_2455at 2614.314 kb on + strand, within Dsui_2455at 2614.393 kb on + strand, within Dsui_2455at 2614.460 kb on - strandat 2614.713 kb on + strandat 2614.721 kb on + strandat 2614.721 kb on - strandat 2614.723 kb on + strandat 2614.754 kb on + strandat 2614.762 kb on - strand, within Dsui_2456at 2614.762 kb on - strand, within Dsui_2456at 2614.764 kb on + strand, within Dsui_2456at 2614.787 kb on + strand, within Dsui_2456at 2614.789 kb on + strand, within Dsui_2456at 2614.963 kb on + strand, within Dsui_2456at 2614.963 kb on + strand, within Dsui_2456at 2615.031 kb on + strandat 2615.055 kb on + strandat 2615.134 kb on + strandat 2615.174 kb on + strandat 2615.271 kb on + strand, within Dsui_2457at 2615.384 kb on + strand, within Dsui_2457at 2615.424 kb on + strand, within Dsui_2457at 2615.704 kb on + strand, within Dsui_2457at 2615.731 kb on + strand, within Dsui_2457

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,612,786 + +1.0
2,612,786 + +1.5
2,612,818 + +1.9
2,612,916 + Dsui_2454 0.19 -0.6
2,612,916 + Dsui_2454 0.19 -2.0
2,612,916 + Dsui_2454 0.19 -1.3
2,613,137 + Dsui_2454 0.70 -1.9
2,613,211 + Dsui_2454 0.87 +1.2
2,613,211 + Dsui_2454 0.87 +1.5
2,613,245 + +0.8
2,613,274 + +1.2
2,613,402 + +1.3
2,613,402 + +1.3
2,613,426 + +1.3
2,613,437 - -3.3
2,613,456 - Dsui_2455 0.11 +1.0
2,613,478 + Dsui_2455 0.13 +2.1
2,613,617 + Dsui_2455 0.22 +1.2
2,613,617 + Dsui_2455 0.22 +1.6
2,613,636 + Dsui_2455 0.24 +1.3
2,613,705 + Dsui_2455 0.28 +1.0
2,613,733 + Dsui_2455 0.30 +0.8
2,613,792 + Dsui_2455 0.34 +1.4
2,613,792 + Dsui_2455 0.34 +0.5
2,613,792 + Dsui_2455 0.34 +2.1
2,613,792 + Dsui_2455 0.34 +1.4
2,613,794 + Dsui_2455 0.34 +1.0
2,613,902 + Dsui_2455 0.42 +1.3
2,613,903 + Dsui_2455 0.42 +0.2
2,613,907 + Dsui_2455 0.42 +1.5
2,614,159 + Dsui_2455 0.60 +0.5
2,614,167 - -2.3
2,614,231 + Dsui_2455 0.65 +1.3
2,614,248 + Dsui_2455 0.66 +2.0
2,614,275 + Dsui_2455 0.68 +0.8
2,614,314 + Dsui_2455 0.70 +1.1
2,614,393 + Dsui_2455 0.76 +1.6
2,614,460 - -1.4
2,614,713 + +1.3
2,614,721 + +1.2
2,614,721 - -0.7
2,614,723 + +0.1
2,614,754 + +0.6
2,614,762 - Dsui_2456 0.12 -0.6
2,614,762 - Dsui_2456 0.12 -0.2
2,614,764 + Dsui_2456 0.13 +0.9
2,614,787 + Dsui_2456 0.22 +0.8
2,614,789 + Dsui_2456 0.22 +0.7
2,614,963 + Dsui_2456 0.86 +1.4
2,614,963 + Dsui_2456 0.86 +1.4
2,615,031 + +0.9
2,615,055 + +1.3
2,615,134 + -1.7
2,615,174 + -2.9
2,615,271 + Dsui_2457 0.12 -0.8
2,615,384 + Dsui_2457 0.18 +0.1
2,615,424 + Dsui_2457 0.20 -0.9
2,615,704 + Dsui_2457 0.36 +0.2
2,615,731 + Dsui_2457 0.38 +0.2

Or see this region's nucleotide sequence