Strain Fitness in Dechlorosoma suillum PS around Dsui_2208

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2207 and Dsui_2208 are separated by 101 nucleotidesDsui_2208 and Dsui_2209 are separated by 69 nucleotides Dsui_2207: Dsui_2207 - uncharacterized protein involved in response to NO, at 2,345,838 to 2,346,998 _2207 Dsui_2208: Dsui_2208 - citrate lyase beta subunit, at 2,347,100 to 2,348,107 _2208 Dsui_2209: Dsui_2209 - malate dehydrogenase, at 2,348,177 to 2,349,163 _2209 Position (kb) 2347 2348 2349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2346.131 kb on + strand, within Dsui_2207at 2346.131 kb on + strand, within Dsui_2207at 2346.131 kb on + strand, within Dsui_2207at 2346.155 kb on + strandat 2346.155 kb on + strand, within Dsui_2207at 2346.193 kb on + strandat 2346.193 kb on - strand, within Dsui_2207at 2346.237 kb on + strand, within Dsui_2207at 2346.238 kb on - strand, within Dsui_2207at 2346.254 kb on - strand, within Dsui_2207at 2346.254 kb on - strand, within Dsui_2207at 2346.299 kb on + strand, within Dsui_2207at 2346.300 kb on + strand, within Dsui_2207at 2346.308 kb on - strand, within Dsui_2207at 2346.473 kb on + strand, within Dsui_2207at 2346.473 kb on + strand, within Dsui_2207at 2346.481 kb on - strandat 2346.481 kb on - strand, within Dsui_2207at 2346.481 kb on - strand, within Dsui_2207at 2346.481 kb on - strand, within Dsui_2207at 2346.481 kb on - strand, within Dsui_2207at 2346.481 kb on - strand, within Dsui_2207at 2346.482 kb on - strand, within Dsui_2207at 2346.592 kb on + strand, within Dsui_2207at 2346.623 kb on - strand, within Dsui_2207at 2346.735 kb on + strand, within Dsui_2207at 2346.735 kb on + strand, within Dsui_2207at 2346.738 kb on - strand, within Dsui_2207at 2346.784 kb on + strand, within Dsui_2207at 2346.857 kb on + strand, within Dsui_2207at 2346.915 kb on + strandat 2346.916 kb on + strandat 2346.920 kb on + strandat 2347.001 kb on - strandat 2347.010 kb on - strandat 2347.023 kb on - strandat 2347.142 kb on + strandat 2347.408 kb on - strand, within Dsui_2208at 2347.454 kb on - strand, within Dsui_2208at 2347.510 kb on + strand, within Dsui_2208at 2347.611 kb on - strand, within Dsui_2208at 2347.703 kb on - strand, within Dsui_2208at 2347.744 kb on + strand, within Dsui_2208at 2347.754 kb on + strand, within Dsui_2208at 2347.885 kb on - strand, within Dsui_2208at 2347.984 kb on - strand, within Dsui_2208at 2347.989 kb on - strand, within Dsui_2208at 2348.044 kb on - strandat 2348.091 kb on + strandat 2348.103 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,346,131 + Dsui_2207 0.25 +0.1
2,346,131 + Dsui_2207 0.25 -1.3
2,346,131 + Dsui_2207 0.25 -1.1
2,346,155 + -3.0
2,346,155 + Dsui_2207 0.27 +0.4
2,346,193 + -0.8
2,346,193 - Dsui_2207 0.31 +1.0
2,346,237 + Dsui_2207 0.34 +0.3
2,346,238 - Dsui_2207 0.34 -0.4
2,346,254 - Dsui_2207 0.36 +0.2
2,346,254 - Dsui_2207 0.36 +0.4
2,346,299 + Dsui_2207 0.40 +1.1
2,346,300 + Dsui_2207 0.40 -0.9
2,346,308 - Dsui_2207 0.40 +0.9
2,346,473 + Dsui_2207 0.55 -2.0
2,346,473 + Dsui_2207 0.55 -0.8
2,346,481 - +2.4
2,346,481 - Dsui_2207 0.55 -0.5
2,346,481 - Dsui_2207 0.55 -0.5
2,346,481 - Dsui_2207 0.55 +0.2
2,346,481 - Dsui_2207 0.55 +0.5
2,346,481 - Dsui_2207 0.55 -1.1
2,346,482 - Dsui_2207 0.55 -1.8
2,346,592 + Dsui_2207 0.65 -0.1
2,346,623 - Dsui_2207 0.68 -0.3
2,346,735 + Dsui_2207 0.77 +0.2
2,346,735 + Dsui_2207 0.77 -2.4
2,346,738 - Dsui_2207 0.78 +0.9
2,346,784 + Dsui_2207 0.81 -2.4
2,346,857 + Dsui_2207 0.88 -0.8
2,346,915 + -0.6
2,346,916 + -1.5
2,346,920 + +0.8
2,347,001 - +0.4
2,347,010 - +1.3
2,347,023 - -0.4
2,347,142 + -0.6
2,347,408 - Dsui_2208 0.31 +0.4
2,347,454 - Dsui_2208 0.35 +0.5
2,347,510 + Dsui_2208 0.41 +0.3
2,347,611 - Dsui_2208 0.51 -0.6
2,347,703 - Dsui_2208 0.60 +1.2
2,347,744 + Dsui_2208 0.64 +1.4
2,347,754 + Dsui_2208 0.65 -0.8
2,347,885 - Dsui_2208 0.78 +0.9
2,347,984 - Dsui_2208 0.88 +0.6
2,347,989 - Dsui_2208 0.88 +1.8
2,348,044 - +1.9
2,348,091 + -0.6
2,348,103 + -0.7

Or see this region's nucleotide sequence