Strain Fitness in Dechlorosoma suillum PS around Dsui_1979

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1978 and Dsui_1979 are separated by 12 nucleotidesDsui_1979 and Dsui_1980 are separated by 491 nucleotides Dsui_1978: Dsui_1978 - putative lipoprotein, at 2,086,870 to 2,088,003 _1978 Dsui_1979: Dsui_1979 - metal-dependent hydrolase, beta-lactamase superfamily I, at 2,088,016 to 2,088,783 _1979 Dsui_1980: Dsui_1980 - hypothetical protein, at 2,089,275 to 2,089,748 _1980 Position (kb) 2088 2089Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2087.754 kb on + strand, within Dsui_1978at 2087.754 kb on + strand, within Dsui_1978at 2087.907 kb on + strandat 2088.182 kb on - strand, within Dsui_1979at 2088.204 kb on - strand, within Dsui_1979at 2088.308 kb on - strand, within Dsui_1979at 2088.324 kb on + strand, within Dsui_1979at 2088.324 kb on + strand, within Dsui_1979at 2088.332 kb on - strand, within Dsui_1979at 2088.332 kb on - strand, within Dsui_1979at 2088.455 kb on + strand, within Dsui_1979at 2088.482 kb on + strand, within Dsui_1979at 2088.490 kb on - strand, within Dsui_1979at 2088.550 kb on + strand, within Dsui_1979at 2088.626 kb on + strand, within Dsui_1979at 2088.685 kb on - strand, within Dsui_1979at 2088.685 kb on - strand, within Dsui_1979at 2088.709 kb on + strandat 2088.717 kb on - strandat 2088.727 kb on + strandat 2088.790 kb on - strandat 2089.161 kb on - strandat 2089.179 kb on + strandat 2089.234 kb on - strandat 2089.234 kb on - strandat 2089.289 kb on + strandat 2089.311 kb on - strandat 2089.350 kb on - strand, within Dsui_1980at 2089.350 kb on - strand, within Dsui_1980at 2089.410 kb on + strand, within Dsui_1980at 2089.471 kb on - strand, within Dsui_1980at 2089.482 kb on - strand, within Dsui_1980at 2089.549 kb on - strandat 2089.569 kb on + strandat 2089.570 kb on - strand, within Dsui_1980at 2089.610 kb on + strand, within Dsui_1980at 2089.627 kb on - strand, within Dsui_1980at 2089.639 kb on + strand, within Dsui_1980at 2089.662 kb on - strand, within Dsui_1980at 2089.674 kb on - strand, within Dsui_1980at 2089.698 kb on + strand, within Dsui_1980at 2089.752 kb on - strandat 2089.763 kb on - strandat 2089.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,087,754 + Dsui_1978 0.78 -3.7
2,087,754 + Dsui_1978 0.78 -1.2
2,087,907 + +1.1
2,088,182 - Dsui_1979 0.22 +0.2
2,088,204 - Dsui_1979 0.24 +0.3
2,088,308 - Dsui_1979 0.38 +0.7
2,088,324 + Dsui_1979 0.40 +1.2
2,088,324 + Dsui_1979 0.40 +0.6
2,088,332 - Dsui_1979 0.41 +0.9
2,088,332 - Dsui_1979 0.41 +1.0
2,088,455 + Dsui_1979 0.57 +0.8
2,088,482 + Dsui_1979 0.61 -0.0
2,088,490 - Dsui_1979 0.62 +0.7
2,088,550 + Dsui_1979 0.70 +2.2
2,088,626 + Dsui_1979 0.79 +1.7
2,088,685 - Dsui_1979 0.87 +1.1
2,088,685 - Dsui_1979 0.87 +1.2
2,088,709 + +0.1
2,088,717 - +0.2
2,088,727 + +1.3
2,088,790 - +1.2
2,089,161 - +0.2
2,089,179 + -1.1
2,089,234 - +0.8
2,089,234 - -0.0
2,089,289 + -0.7
2,089,311 - +0.5
2,089,350 - Dsui_1980 0.16 +0.2
2,089,350 - Dsui_1980 0.16 +1.1
2,089,410 + Dsui_1980 0.28 +0.2
2,089,471 - Dsui_1980 0.41 +1.3
2,089,482 - Dsui_1980 0.44 +0.9
2,089,549 - -1.5
2,089,569 + -1.9
2,089,570 - Dsui_1980 0.62 +0.6
2,089,610 + Dsui_1980 0.71 -1.1
2,089,627 - Dsui_1980 0.74 +0.5
2,089,639 + Dsui_1980 0.77 -2.1
2,089,662 - Dsui_1980 0.82 +1.7
2,089,674 - Dsui_1980 0.84 +0.6
2,089,698 + Dsui_1980 0.89 -0.8
2,089,752 - -0.1
2,089,763 - -0.9
2,089,773 - +0.5

Or see this region's nucleotide sequence