Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1795 and Dsui_1796 are separated by 144 nucleotides Dsui_1796 and Dsui_1797 are separated by 77 nucleotides Dsui_1797 and Dsui_1798 are separated by 29 nucleotides
Dsui_1795: Dsui_1795 - hypothetical protein, at 1,895,163 to 1,895,501
_1795
Dsui_1796: Dsui_1796 - phage/plasmid-related protein TIGR03299, at 1,895,646 to 1,896,614
_1796
Dsui_1797: Dsui_1797 - putative phage-type endonuclease, at 1,896,692 to 1,897,264
_1797
Dsui_1798: Dsui_1798 - DNA replication protein, at 1,897,294 to 1,898,028
_1798
Position (kb)
1895
1896
1897 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1894.652 kb on - strand at 1894.680 kb on + strand at 1894.680 kb on + strand at 1894.680 kb on + strand at 1894.680 kb on + strand at 1894.680 kb on + strand at 1894.680 kb on + strand at 1894.680 kb on + strand at 1894.680 kb on + strand at 1894.680 kb on + strand at 1894.788 kb on + strand at 1894.788 kb on - strand at 1894.851 kb on + strand at 1894.864 kb on + strand at 1894.864 kb on + strand at 1894.877 kb on + strand at 1894.921 kb on + strand at 1894.951 kb on + strand at 1894.951 kb on + strand at 1894.958 kb on + strand at 1894.960 kb on + strand at 1894.960 kb on + strand at 1894.960 kb on + strand at 1894.965 kb on + strand at 1894.966 kb on - strand at 1894.966 kb on - strand at 1894.983 kb on - strand at 1894.998 kb on + strand at 1895.043 kb on + strand at 1895.043 kb on + strand at 1895.043 kb on + strand at 1895.043 kb on + strand at 1895.051 kb on - strand at 1895.051 kb on - strand at 1895.051 kb on - strand at 1895.051 kb on - strand at 1895.051 kb on - strand at 1895.051 kb on - strand at 1895.051 kb on - strand at 1895.051 kb on - strand at 1895.051 kb on - strand at 1895.051 kb on - strand at 1895.052 kb on + strand at 1895.052 kb on + strand at 1895.052 kb on + strand at 1895.052 kb on + strand at 1895.052 kb on + strand at 1895.052 kb on + strand at 1895.060 kb on - strand at 1895.060 kb on - strand at 1895.060 kb on - strand at 1895.060 kb on - strand at 1895.060 kb on - strand at 1895.060 kb on - strand at 1895.060 kb on - strand at 1895.067 kb on - strand at 1895.069 kb on + strand at 1895.069 kb on + strand at 1895.069 kb on + strand at 1895.069 kb on + strand at 1895.069 kb on + strand at 1895.069 kb on + strand at 1895.072 kb on - strand at 1895.072 kb on - strand at 1895.074 kb on + strand at 1895.074 kb on + strand at 1895.074 kb on + strand at 1895.074 kb on + strand at 1895.074 kb on + strand at 1895.075 kb on + strand at 1895.083 kb on - strand at 1895.089 kb on + strand at 1895.089 kb on + strand at 1895.089 kb on + strand at 1895.089 kb on + strand at 1895.089 kb on + strand at 1895.089 kb on + strand at 1895.094 kb on + strand at 1895.097 kb on - strand at 1895.099 kb on + strand at 1895.099 kb on + strand at 1895.099 kb on + strand at 1895.099 kb on + strand at 1895.099 kb on + strand at 1895.099 kb on + strand at 1895.099 kb on + strand at 1895.102 kb on - strand at 1895.102 kb on - strand at 1895.102 kb on - strand at 1895.107 kb on - strand at 1895.107 kb on - strand at 1895.107 kb on - strand at 1895.136 kb on + strand at 1895.183 kb on - strand at 1895.189 kb on + strand at 1895.202 kb on - strand, within Dsui_1795 at 1895.204 kb on - strand, within Dsui_1795 at 1895.206 kb on + strand, within Dsui_1795 at 1895.215 kb on - strand, within Dsui_1795 at 1895.227 kb on + strand, within Dsui_1795 at 1895.245 kb on - strand, within Dsui_1795 at 1895.276 kb on - strand, within Dsui_1795 at 1895.314 kb on - strand, within Dsui_1795 at 1895.365 kb on + strand, within Dsui_1795 at 1895.365 kb on + strand, within Dsui_1795 at 1895.411 kb on + strand, within Dsui_1795 at 1895.468 kb on - strand at 1895.493 kb on + strand at 1895.512 kb on + strand at 1895.545 kb on - strand at 1895.545 kb on - strand at 1895.576 kb on + strand at 1895.605 kb on - strand at 1895.647 kb on - strand at 1895.687 kb on + strand at 1895.695 kb on - strand at 1895.754 kb on + strand, within Dsui_1796 at 1895.762 kb on - strand, within Dsui_1796 at 1895.787 kb on - strand at 1895.812 kb on - strand, within Dsui_1796 at 1895.875 kb on + strand at 1895.897 kb on - strand, within Dsui_1796 at 1895.905 kb on + strand, within Dsui_1796 at 1895.914 kb on - strand, within Dsui_1796 at 1895.914 kb on - strand, within Dsui_1796 at 1895.922 kb on + strand at 1895.922 kb on + strand, within Dsui_1796 at 1895.935 kb on + strand, within Dsui_1796 at 1896.022 kb on - strand, within Dsui_1796 at 1896.037 kb on - strand, within Dsui_1796 at 1896.046 kb on + strand, within Dsui_1796 at 1896.056 kb on + strand at 1896.056 kb on + strand, within Dsui_1796 at 1896.056 kb on + strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.064 kb on - strand, within Dsui_1796 at 1896.086 kb on - strand, within Dsui_1796 at 1896.099 kb on - strand, within Dsui_1796 at 1896.132 kb on - strand, within Dsui_1796 at 1896.147 kb on + strand, within Dsui_1796 at 1896.147 kb on + strand, within Dsui_1796 at 1896.155 kb on - strand, within Dsui_1796 at 1896.162 kb on - strand, within Dsui_1796 at 1896.164 kb on + strand, within Dsui_1796 at 1896.169 kb on + strand, within Dsui_1796 at 1896.169 kb on + strand, within Dsui_1796 at 1896.177 kb on - strand, within Dsui_1796 at 1896.238 kb on + strand, within Dsui_1796 at 1896.261 kb on + strand, within Dsui_1796 at 1896.262 kb on + strand at 1896.281 kb on + strand, within Dsui_1796 at 1896.336 kb on - strand, within Dsui_1796 at 1896.404 kb on + strand, within Dsui_1796 at 1896.422 kb on - strand, within Dsui_1796 at 1896.423 kb on + strand at 1896.484 kb on - strand at 1896.484 kb on - strand, within Dsui_1796 at 1896.587 kb on - strand at 1896.594 kb on + strand at 1896.600 kb on - strand at 1896.657 kb on - strand at 1896.669 kb on + strand at 1896.714 kb on - strand at 1896.722 kb on + strand at 1896.736 kb on - strand at 1896.774 kb on - strand, within Dsui_1797 at 1896.801 kb on + strand at 1896.825 kb on - strand at 1896.834 kb on + strand at 1896.842 kb on - strand, within Dsui_1797 at 1896.898 kb on + strand, within Dsui_1797 at 1896.906 kb on - strand, within Dsui_1797 at 1896.937 kb on + strand at 1896.947 kb on - strand, within Dsui_1797 at 1896.948 kb on + strand, within Dsui_1797 at 1896.983 kb on - strand, within Dsui_1797 at 1897.014 kb on - strand, within Dsui_1797 at 1897.042 kb on + strand at 1897.050 kb on - strand, within Dsui_1797 at 1897.099 kb on - strand, within Dsui_1797 at 1897.136 kb on - strand, within Dsui_1797 at 1897.233 kb on + strand at 1897.241 kb on - strand at 1897.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 1,894,652 - -0.2 1,894,680 + +0.8 1,894,680 + -0.5 1,894,680 + +0.0 1,894,680 + +2.8 1,894,680 + -0.4 1,894,680 + +0.3 1,894,680 + -0.1 1,894,680 + -0.3 1,894,680 + +0.0 1,894,788 + -2.0 1,894,788 - -0.6 1,894,851 + +0.7 1,894,864 + +1.9 1,894,864 + +0.4 1,894,877 + -1.6 1,894,921 + -0.1 1,894,951 + -0.2 1,894,951 + -3.2 1,894,958 + -2.2 1,894,960 + -0.1 1,894,960 + -0.3 1,894,960 + -0.4 1,894,965 + -0.3 1,894,966 - -2.2 1,894,966 - -1.6 1,894,983 - -2.0 1,894,998 + -0.4 1,895,043 + +0.3 1,895,043 + +1.9 1,895,043 + -2.7 1,895,043 + -2.0 1,895,051 - -2.0 1,895,051 - -1.1 1,895,051 - -0.2 1,895,051 - +0.2 1,895,051 - -0.1 1,895,051 - +0.7 1,895,051 - -0.4 1,895,051 - -0.4 1,895,051 - -0.7 1,895,051 - +0.2 1,895,052 + +0.9 1,895,052 + +1.7 1,895,052 + -3.4 1,895,052 + -2.3 1,895,052 + -0.4 1,895,052 + +0.4 1,895,060 - -3.7 1,895,060 - -2.9 1,895,060 - -2.6 1,895,060 - -3.6 1,895,060 - -3.6 1,895,060 - -1.1 1,895,060 - -0.3 1,895,067 - -3.0 1,895,069 + +0.0 1,895,069 + -1.4 1,895,069 + -3.5 1,895,069 + -0.9 1,895,069 + -0.4 1,895,069 + +0.6 1,895,072 - -2.8 1,895,072 - -2.0 1,895,074 + -2.6 1,895,074 + -0.5 1,895,074 + -2.8 1,895,074 + -0.5 1,895,074 + -1.6 1,895,075 + -1.6 1,895,083 - -1.6 1,895,089 + -2.0 1,895,089 + -2.3 1,895,089 + -1.8 1,895,089 + -1.5 1,895,089 + -3.0 1,895,089 + +0.1 1,895,094 + -1.3 1,895,097 - -2.4 1,895,099 + +0.4 1,895,099 + -1.0 1,895,099 + -2.2 1,895,099 + +1.2 1,895,099 + +1.1 1,895,099 + -2.2 1,895,099 + -1.1 1,895,102 - -3.2 1,895,102 - -3.6 1,895,102 - -1.6 1,895,107 - -3.5 1,895,107 - -4.5 1,895,107 - -0.1 1,895,136 + -2.6 1,895,183 - -1.3 1,895,189 + +1.2 1,895,202 - Dsui_1795 0.12 -3.0 1,895,204 - Dsui_1795 0.12 -3.4 1,895,206 + Dsui_1795 0.13 +0.0 1,895,215 - Dsui_1795 0.15 -1.6 1,895,227 + Dsui_1795 0.19 -1.0 1,895,245 - Dsui_1795 0.24 -3.2 1,895,276 - Dsui_1795 0.33 -3.3 1,895,314 - Dsui_1795 0.45 -0.5 1,895,365 + Dsui_1795 0.60 -0.7 1,895,365 + Dsui_1795 0.60 -0.4 1,895,411 + Dsui_1795 0.73 -1.2 1,895,468 - -2.8 1,895,493 + -0.4 1,895,512 + -0.7 1,895,545 - -1.0 1,895,545 - -2.6 1,895,576 + -0.0 1,895,605 - -0.3 1,895,647 - -0.7 1,895,687 + -2.6 1,895,695 - -3.0 1,895,754 + Dsui_1796 0.11 -3.0 1,895,762 - Dsui_1796 0.12 -1.0 1,895,787 - -1.2 1,895,812 - Dsui_1796 0.17 +0.3 1,895,875 + -3.1 1,895,897 - Dsui_1796 0.26 -1.2 1,895,905 + Dsui_1796 0.27 -2.6 1,895,914 - Dsui_1796 0.28 -2.6 1,895,914 - Dsui_1796 0.28 -2.8 1,895,922 + -2.0 1,895,922 + Dsui_1796 0.28 -2.9 1,895,935 + Dsui_1796 0.30 -1.9 1,896,022 - Dsui_1796 0.39 +0.1 1,896,037 - Dsui_1796 0.40 -2.8 1,896,046 + Dsui_1796 0.41 -1.6 1,896,056 + -3.0 1,896,056 + Dsui_1796 0.42 -3.3 1,896,056 + Dsui_1796 0.42 -2.5 1,896,064 - Dsui_1796 0.43 -2.8 1,896,064 - Dsui_1796 0.43 -2.6 1,896,064 - Dsui_1796 0.43 -1.5 1,896,064 - Dsui_1796 0.43 -0.6 1,896,064 - Dsui_1796 0.43 -1.3 1,896,086 - Dsui_1796 0.45 -3.7 1,896,099 - Dsui_1796 0.47 +0.1 1,896,132 - Dsui_1796 0.50 -1.4 1,896,147 + Dsui_1796 0.52 +0.1 1,896,147 + Dsui_1796 0.52 +0.0 1,896,155 - Dsui_1796 0.53 -1.6 1,896,162 - Dsui_1796 0.53 +2.8 1,896,164 + Dsui_1796 0.53 -2.6 1,896,169 + Dsui_1796 0.54 -1.9 1,896,169 + Dsui_1796 0.54 -2.7 1,896,177 - Dsui_1796 0.55 +0.3 1,896,238 + Dsui_1796 0.61 -0.6 1,896,261 + Dsui_1796 0.63 -2.7 1,896,262 + +2.3 1,896,281 + Dsui_1796 0.66 -2.6 1,896,336 - Dsui_1796 0.71 -3.1 1,896,404 + Dsui_1796 0.78 -1.8 1,896,422 - Dsui_1796 0.80 -3.2 1,896,423 + -2.0 1,896,484 - -2.9 1,896,484 - Dsui_1796 0.86 +0.3 1,896,587 - +1.5 1,896,594 + +0.3 1,896,600 - -3.0 1,896,657 - -3.6 1,896,669 + +0.5 1,896,714 - -0.9 1,896,722 + -1.1 1,896,736 - -1.1 1,896,774 - Dsui_1797 0.14 -3.6 1,896,801 + -2.6 1,896,825 - -1.8 1,896,834 + -1.8 1,896,842 - Dsui_1797 0.26 -1.6 1,896,898 + Dsui_1797 0.36 +0.0 1,896,906 - Dsui_1797 0.37 -2.1 1,896,937 + -1.8 1,896,947 - Dsui_1797 0.45 -0.6 1,896,948 + Dsui_1797 0.45 -1.8 1,896,983 - Dsui_1797 0.51 -1.0 1,897,014 - Dsui_1797 0.56 -3.8 1,897,042 + -1.5 1,897,050 - Dsui_1797 0.62 -3.5 1,897,099 - Dsui_1797 0.71 -3.0 1,897,136 - Dsui_1797 0.77 -1.0 1,897,233 + +0.3 1,897,241 - -1.3 1,897,266 - -0.6
Or see this region's nucleotide sequence