Strain Fitness in Dechlorosoma suillum PS around Dsui_1795

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1794 and Dsui_1795 are separated by 677 nucleotidesDsui_1795 and Dsui_1796 are separated by 144 nucleotides Dsui_1794: Dsui_1794 - putative transcriptional regulator, at 1,894,222 to 1,894,485 _1794 Dsui_1795: Dsui_1795 - hypothetical protein, at 1,895,163 to 1,895,501 _1795 Dsui_1796: Dsui_1796 - phage/plasmid-related protein TIGR03299, at 1,895,646 to 1,896,614 _1796 Position (kb) 1895 1896Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1894.168 kb on + strandat 1894.176 kb on - strandat 1894.179 kb on + strandat 1894.179 kb on + strandat 1894.179 kb on + strandat 1894.179 kb on + strandat 1894.179 kb on + strandat 1894.186 kb on + strandat 1894.187 kb on - strandat 1894.187 kb on - strandat 1894.187 kb on - strandat 1894.187 kb on - strandat 1894.187 kb on - strandat 1894.191 kb on + strandat 1894.196 kb on + strandat 1894.199 kb on - strandat 1894.219 kb on + strandat 1894.219 kb on + strandat 1894.219 kb on + strandat 1894.227 kb on - strandat 1894.227 kb on - strandat 1894.246 kb on - strandat 1894.246 kb on - strandat 1894.248 kb on + strandat 1894.248 kb on + strandat 1894.248 kb on + strandat 1894.248 kb on + strandat 1894.248 kb on + strandat 1894.248 kb on + strandat 1894.256 kb on - strand, within Dsui_1794at 1894.256 kb on - strand, within Dsui_1794at 1894.256 kb on - strand, within Dsui_1794at 1894.256 kb on - strand, within Dsui_1794at 1894.257 kb on - strand, within Dsui_1794at 1894.262 kb on - strand, within Dsui_1794at 1894.272 kb on - strand, within Dsui_1794at 1894.300 kb on - strand, within Dsui_1794at 1894.320 kb on + strand, within Dsui_1794at 1894.342 kb on - strand, within Dsui_1794at 1894.351 kb on - strand, within Dsui_1794at 1894.374 kb on + strand, within Dsui_1794at 1894.375 kb on - strand, within Dsui_1794at 1894.399 kb on - strand, within Dsui_1794at 1894.402 kb on - strand, within Dsui_1794at 1894.404 kb on - strand, within Dsui_1794at 1894.405 kb on + strand, within Dsui_1794at 1894.405 kb on + strand, within Dsui_1794at 1894.417 kb on + strand, within Dsui_1794at 1894.417 kb on + strand, within Dsui_1794at 1894.421 kb on - strand, within Dsui_1794at 1894.421 kb on - strand, within Dsui_1794at 1894.423 kb on + strand, within Dsui_1794at 1894.431 kb on - strand, within Dsui_1794at 1894.435 kb on - strand, within Dsui_1794at 1894.435 kb on - strand, within Dsui_1794at 1894.435 kb on - strand, within Dsui_1794at 1894.436 kb on + strand, within Dsui_1794at 1894.446 kb on + strand, within Dsui_1794at 1894.446 kb on + strand, within Dsui_1794at 1894.454 kb on - strand, within Dsui_1794at 1894.454 kb on - strand, within Dsui_1794at 1894.454 kb on - strand, within Dsui_1794at 1894.454 kb on - strand, within Dsui_1794at 1894.454 kb on - strand, within Dsui_1794at 1894.454 kb on - strand, within Dsui_1794at 1894.454 kb on - strand, within Dsui_1794at 1894.468 kb on - strandat 1894.485 kb on - strandat 1894.500 kb on - strandat 1894.507 kb on + strandat 1894.509 kb on - strandat 1894.523 kb on + strandat 1894.525 kb on + strandat 1894.525 kb on + strandat 1894.533 kb on - strandat 1894.533 kb on - strandat 1894.563 kb on + strandat 1894.567 kb on + strandat 1894.588 kb on + strandat 1894.596 kb on - strandat 1894.596 kb on - strandat 1894.618 kb on + strandat 1894.644 kb on + strandat 1894.652 kb on - strandat 1894.680 kb on + strandat 1894.680 kb on + strandat 1894.680 kb on + strandat 1894.680 kb on + strandat 1894.680 kb on + strandat 1894.680 kb on + strandat 1894.680 kb on + strandat 1894.680 kb on + strandat 1894.680 kb on + strandat 1894.788 kb on + strandat 1894.788 kb on - strandat 1894.851 kb on + strandat 1894.864 kb on + strandat 1894.864 kb on + strandat 1894.877 kb on + strandat 1894.921 kb on + strandat 1894.951 kb on + strandat 1894.951 kb on + strandat 1894.958 kb on + strandat 1894.960 kb on + strandat 1894.960 kb on + strandat 1894.960 kb on + strandat 1894.965 kb on + strandat 1894.966 kb on - strandat 1894.966 kb on - strandat 1894.983 kb on - strandat 1894.998 kb on + strandat 1895.043 kb on + strandat 1895.043 kb on + strandat 1895.043 kb on + strandat 1895.043 kb on + strandat 1895.051 kb on - strandat 1895.051 kb on - strandat 1895.051 kb on - strandat 1895.051 kb on - strandat 1895.051 kb on - strandat 1895.051 kb on - strandat 1895.051 kb on - strandat 1895.051 kb on - strandat 1895.051 kb on - strandat 1895.051 kb on - strandat 1895.052 kb on + strandat 1895.052 kb on + strandat 1895.052 kb on + strandat 1895.052 kb on + strandat 1895.052 kb on + strandat 1895.052 kb on + strandat 1895.060 kb on - strandat 1895.060 kb on - strandat 1895.060 kb on - strandat 1895.060 kb on - strandat 1895.060 kb on - strandat 1895.060 kb on - strandat 1895.060 kb on - strandat 1895.067 kb on - strandat 1895.069 kb on + strandat 1895.069 kb on + strandat 1895.069 kb on + strandat 1895.069 kb on + strandat 1895.069 kb on + strandat 1895.069 kb on + strandat 1895.072 kb on - strandat 1895.072 kb on - strandat 1895.074 kb on + strandat 1895.074 kb on + strandat 1895.074 kb on + strandat 1895.074 kb on + strandat 1895.074 kb on + strandat 1895.075 kb on + strandat 1895.083 kb on - strandat 1895.089 kb on + strandat 1895.089 kb on + strandat 1895.089 kb on + strandat 1895.089 kb on + strandat 1895.089 kb on + strandat 1895.089 kb on + strandat 1895.094 kb on + strandat 1895.097 kb on - strandat 1895.099 kb on + strandat 1895.099 kb on + strandat 1895.099 kb on + strandat 1895.099 kb on + strandat 1895.099 kb on + strandat 1895.099 kb on + strandat 1895.099 kb on + strandat 1895.102 kb on - strandat 1895.102 kb on - strandat 1895.102 kb on - strandat 1895.107 kb on - strandat 1895.107 kb on - strandat 1895.107 kb on - strandat 1895.136 kb on + strandat 1895.183 kb on - strandat 1895.189 kb on + strandat 1895.202 kb on - strand, within Dsui_1795at 1895.204 kb on - strand, within Dsui_1795at 1895.206 kb on + strand, within Dsui_1795at 1895.215 kb on - strand, within Dsui_1795at 1895.227 kb on + strand, within Dsui_1795at 1895.245 kb on - strand, within Dsui_1795at 1895.276 kb on - strand, within Dsui_1795at 1895.314 kb on - strand, within Dsui_1795at 1895.365 kb on + strand, within Dsui_1795at 1895.365 kb on + strand, within Dsui_1795at 1895.411 kb on + strand, within Dsui_1795at 1895.468 kb on - strandat 1895.493 kb on + strandat 1895.512 kb on + strandat 1895.545 kb on - strandat 1895.545 kb on - strandat 1895.576 kb on + strandat 1895.605 kb on - strandat 1895.647 kb on - strandat 1895.687 kb on + strandat 1895.695 kb on - strandat 1895.754 kb on + strand, within Dsui_1796at 1895.762 kb on - strand, within Dsui_1796at 1895.787 kb on - strandat 1895.812 kb on - strand, within Dsui_1796at 1895.875 kb on + strandat 1895.897 kb on - strand, within Dsui_1796at 1895.905 kb on + strand, within Dsui_1796at 1895.914 kb on - strand, within Dsui_1796at 1895.914 kb on - strand, within Dsui_1796at 1895.922 kb on + strandat 1895.922 kb on + strand, within Dsui_1796at 1895.935 kb on + strand, within Dsui_1796at 1896.022 kb on - strand, within Dsui_1796at 1896.037 kb on - strand, within Dsui_1796at 1896.046 kb on + strand, within Dsui_1796at 1896.056 kb on + strandat 1896.056 kb on + strand, within Dsui_1796at 1896.056 kb on + strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.064 kb on - strand, within Dsui_1796at 1896.086 kb on - strand, within Dsui_1796at 1896.099 kb on - strand, within Dsui_1796at 1896.132 kb on - strand, within Dsui_1796at 1896.147 kb on + strand, within Dsui_1796at 1896.147 kb on + strand, within Dsui_1796at 1896.155 kb on - strand, within Dsui_1796at 1896.162 kb on - strand, within Dsui_1796at 1896.164 kb on + strand, within Dsui_1796at 1896.169 kb on + strand, within Dsui_1796at 1896.169 kb on + strand, within Dsui_1796at 1896.177 kb on - strand, within Dsui_1796at 1896.238 kb on + strand, within Dsui_1796at 1896.261 kb on + strand, within Dsui_1796at 1896.262 kb on + strandat 1896.281 kb on + strand, within Dsui_1796at 1896.336 kb on - strand, within Dsui_1796at 1896.404 kb on + strand, within Dsui_1796at 1896.422 kb on - strand, within Dsui_1796at 1896.423 kb on + strandat 1896.484 kb on - strandat 1896.484 kb on - strand, within Dsui_1796

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,894,168 + +0.1
1,894,176 - -0.4
1,894,179 + +0.4
1,894,179 + -0.4
1,894,179 + -0.9
1,894,179 + +0.4
1,894,179 + -1.5
1,894,186 + -1.0
1,894,187 - +0.1
1,894,187 - -0.7
1,894,187 - +0.1
1,894,187 - -0.4
1,894,187 - +0.7
1,894,191 + -1.4
1,894,196 + +0.5
1,894,199 - -0.1
1,894,219 + +0.2
1,894,219 + +1.4
1,894,219 + -1.8
1,894,227 - +1.5
1,894,227 - +1.7
1,894,246 - -1.0
1,894,246 - -0.4
1,894,248 + -1.8
1,894,248 + -0.2
1,894,248 + +0.4
1,894,248 + -0.3
1,894,248 + -0.1
1,894,248 + -0.2
1,894,256 - Dsui_1794 0.13 +1.4
1,894,256 - Dsui_1794 0.13 +0.2
1,894,256 - Dsui_1794 0.13 +0.7
1,894,256 - Dsui_1794 0.13 -0.5
1,894,257 - Dsui_1794 0.13 +0.3
1,894,262 - Dsui_1794 0.15 -1.0
1,894,272 - Dsui_1794 0.19 +0.4
1,894,300 - Dsui_1794 0.30 +0.0
1,894,320 + Dsui_1794 0.37 -0.3
1,894,342 - Dsui_1794 0.45 -1.1
1,894,351 - Dsui_1794 0.49 +0.3
1,894,374 + Dsui_1794 0.58 +0.3
1,894,375 - Dsui_1794 0.58 -0.5
1,894,399 - Dsui_1794 0.67 -0.2
1,894,402 - Dsui_1794 0.68 +0.5
1,894,404 - Dsui_1794 0.69 +0.2
1,894,405 + Dsui_1794 0.69 -1.4
1,894,405 + Dsui_1794 0.69 +0.3
1,894,417 + Dsui_1794 0.74 -0.1
1,894,417 + Dsui_1794 0.74 +0.7
1,894,421 - Dsui_1794 0.75 +1.0
1,894,421 - Dsui_1794 0.75 +0.7
1,894,423 + Dsui_1794 0.76 -0.2
1,894,431 - Dsui_1794 0.79 +0.1
1,894,435 - Dsui_1794 0.81 -0.2
1,894,435 - Dsui_1794 0.81 +1.3
1,894,435 - Dsui_1794 0.81 +0.2
1,894,436 + Dsui_1794 0.81 +0.3
1,894,446 + Dsui_1794 0.85 +0.5
1,894,446 + Dsui_1794 0.85 +1.0
1,894,454 - Dsui_1794 0.88 +0.3
1,894,454 - Dsui_1794 0.88 -0.3
1,894,454 - Dsui_1794 0.88 -1.0
1,894,454 - Dsui_1794 0.88 -0.3
1,894,454 - Dsui_1794 0.88 +1.2
1,894,454 - Dsui_1794 0.88 -1.0
1,894,454 - Dsui_1794 0.88 +0.2
1,894,468 - +0.6
1,894,485 - +0.1
1,894,500 - +0.9
1,894,507 + +0.4
1,894,509 - -0.4
1,894,523 + +0.7
1,894,525 + -0.6
1,894,525 + +0.1
1,894,533 - -0.1
1,894,533 - +0.3
1,894,563 + -2.7
1,894,567 + -0.6
1,894,588 + +0.9
1,894,596 - +0.1
1,894,596 - +0.6
1,894,618 + -0.0
1,894,644 + +0.2
1,894,652 - -0.2
1,894,680 + +0.8
1,894,680 + -0.5
1,894,680 + +0.0
1,894,680 + +2.8
1,894,680 + -0.4
1,894,680 + +0.3
1,894,680 + -0.1
1,894,680 + -0.3
1,894,680 + +0.0
1,894,788 + -2.0
1,894,788 - -0.6
1,894,851 + +0.7
1,894,864 + +1.9
1,894,864 + +0.4
1,894,877 + -1.6
1,894,921 + -0.1
1,894,951 + -0.2
1,894,951 + -3.2
1,894,958 + -2.2
1,894,960 + -0.1
1,894,960 + -0.3
1,894,960 + -0.4
1,894,965 + -0.3
1,894,966 - -2.2
1,894,966 - -1.6
1,894,983 - -2.0
1,894,998 + -0.4
1,895,043 + +0.3
1,895,043 + +1.9
1,895,043 + -2.7
1,895,043 + -2.0
1,895,051 - -2.0
1,895,051 - -1.1
1,895,051 - -0.2
1,895,051 - +0.2
1,895,051 - -0.1
1,895,051 - +0.7
1,895,051 - -0.4
1,895,051 - -0.4
1,895,051 - -0.7
1,895,051 - +0.2
1,895,052 + +0.9
1,895,052 + +1.7
1,895,052 + -3.4
1,895,052 + -2.3
1,895,052 + -0.4
1,895,052 + +0.4
1,895,060 - -3.7
1,895,060 - -2.9
1,895,060 - -2.6
1,895,060 - -3.6
1,895,060 - -3.6
1,895,060 - -1.1
1,895,060 - -0.3
1,895,067 - -3.0
1,895,069 + +0.0
1,895,069 + -1.4
1,895,069 + -3.5
1,895,069 + -0.9
1,895,069 + -0.4
1,895,069 + +0.6
1,895,072 - -2.8
1,895,072 - -2.0
1,895,074 + -2.6
1,895,074 + -0.5
1,895,074 + -2.8
1,895,074 + -0.5
1,895,074 + -1.6
1,895,075 + -1.6
1,895,083 - -1.6
1,895,089 + -2.0
1,895,089 + -2.3
1,895,089 + -1.8
1,895,089 + -1.5
1,895,089 + -3.0
1,895,089 + +0.1
1,895,094 + -1.3
1,895,097 - -2.4
1,895,099 + +0.4
1,895,099 + -1.0
1,895,099 + -2.2
1,895,099 + +1.2
1,895,099 + +1.1
1,895,099 + -2.2
1,895,099 + -1.1
1,895,102 - -3.2
1,895,102 - -3.6
1,895,102 - -1.6
1,895,107 - -3.5
1,895,107 - -4.5
1,895,107 - -0.1
1,895,136 + -2.6
1,895,183 - -1.3
1,895,189 + +1.2
1,895,202 - Dsui_1795 0.12 -3.0
1,895,204 - Dsui_1795 0.12 -3.4
1,895,206 + Dsui_1795 0.13 +0.0
1,895,215 - Dsui_1795 0.15 -1.6
1,895,227 + Dsui_1795 0.19 -1.0
1,895,245 - Dsui_1795 0.24 -3.2
1,895,276 - Dsui_1795 0.33 -3.3
1,895,314 - Dsui_1795 0.45 -0.5
1,895,365 + Dsui_1795 0.60 -0.7
1,895,365 + Dsui_1795 0.60 -0.4
1,895,411 + Dsui_1795 0.73 -1.2
1,895,468 - -2.8
1,895,493 + -0.4
1,895,512 + -0.7
1,895,545 - -1.0
1,895,545 - -2.6
1,895,576 + -0.0
1,895,605 - -0.3
1,895,647 - -0.7
1,895,687 + -2.6
1,895,695 - -3.0
1,895,754 + Dsui_1796 0.11 -3.0
1,895,762 - Dsui_1796 0.12 -1.0
1,895,787 - -1.2
1,895,812 - Dsui_1796 0.17 +0.3
1,895,875 + -3.1
1,895,897 - Dsui_1796 0.26 -1.2
1,895,905 + Dsui_1796 0.27 -2.6
1,895,914 - Dsui_1796 0.28 -2.6
1,895,914 - Dsui_1796 0.28 -2.8
1,895,922 + -2.0
1,895,922 + Dsui_1796 0.28 -2.9
1,895,935 + Dsui_1796 0.30 -1.9
1,896,022 - Dsui_1796 0.39 +0.1
1,896,037 - Dsui_1796 0.40 -2.8
1,896,046 + Dsui_1796 0.41 -1.6
1,896,056 + -3.0
1,896,056 + Dsui_1796 0.42 -3.3
1,896,056 + Dsui_1796 0.42 -2.5
1,896,064 - Dsui_1796 0.43 -2.8
1,896,064 - Dsui_1796 0.43 -2.6
1,896,064 - Dsui_1796 0.43 -1.5
1,896,064 - Dsui_1796 0.43 -0.6
1,896,064 - Dsui_1796 0.43 -1.3
1,896,086 - Dsui_1796 0.45 -3.7
1,896,099 - Dsui_1796 0.47 +0.1
1,896,132 - Dsui_1796 0.50 -1.4
1,896,147 + Dsui_1796 0.52 +0.1
1,896,147 + Dsui_1796 0.52 +0.0
1,896,155 - Dsui_1796 0.53 -1.6
1,896,162 - Dsui_1796 0.53 +2.8
1,896,164 + Dsui_1796 0.53 -2.6
1,896,169 + Dsui_1796 0.54 -1.9
1,896,169 + Dsui_1796 0.54 -2.7
1,896,177 - Dsui_1796 0.55 +0.3
1,896,238 + Dsui_1796 0.61 -0.6
1,896,261 + Dsui_1796 0.63 -2.7
1,896,262 + +2.3
1,896,281 + Dsui_1796 0.66 -2.6
1,896,336 - Dsui_1796 0.71 -3.1
1,896,404 + Dsui_1796 0.78 -1.8
1,896,422 - Dsui_1796 0.80 -3.2
1,896,423 + -2.0
1,896,484 - -2.9
1,896,484 - Dsui_1796 0.86 +0.3

Or see this region's nucleotide sequence