Strain Fitness in Dechlorosoma suillum PS around Dsui_1729

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1727 and Dsui_1728 are separated by 4 nucleotidesDsui_1728 and Dsui_1729 are separated by 75 nucleotidesDsui_1729 and Dsui_1730 are separated by 37 nucleotidesDsui_1730 and Dsui_1731 are separated by 108 nucleotides Dsui_1727: Dsui_1727 - flagellar motor component, at 1,818,501 to 1,819,241 _1727 Dsui_1728: Dsui_1728 - flagellar motor protein, at 1,819,246 to 1,820,097 _1728 Dsui_1729: Dsui_1729 - flagellar biosynthesis/type III secretory pathway chaperone, at 1,820,173 to 1,820,640 _1729 Dsui_1730: Dsui_1730 - flagellar biosynthesis anti-sigma factor FlgM, at 1,820,678 to 1,820,968 _1730 Dsui_1731: Dsui_1731 - flagella basal body P-ring formation protein FlgA, at 1,821,077 to 1,821,796 _1731 Position (kb) 1820 1821Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1819.220 kb on + strandat 1819.378 kb on + strand, within Dsui_1728at 1819.383 kb on + strand, within Dsui_1728at 1819.502 kb on - strand, within Dsui_1728at 1819.610 kb on + strand, within Dsui_1728at 1819.613 kb on - strand, within Dsui_1728at 1819.620 kb on + strand, within Dsui_1728at 1819.678 kb on + strand, within Dsui_1728at 1819.686 kb on - strand, within Dsui_1728at 1819.761 kb on - strand, within Dsui_1728at 1819.814 kb on + strand, within Dsui_1728at 1819.839 kb on - strand, within Dsui_1728at 1819.841 kb on + strand, within Dsui_1728at 1819.846 kb on + strand, within Dsui_1728at 1819.959 kb on - strand, within Dsui_1728at 1820.103 kb on + strandat 1820.110 kb on - strandat 1820.186 kb on + strandat 1820.235 kb on - strand, within Dsui_1729at 1820.239 kb on + strand, within Dsui_1729at 1820.247 kb on - strand, within Dsui_1729at 1820.247 kb on - strand, within Dsui_1729at 1820.286 kb on + strand, within Dsui_1729at 1820.341 kb on + strand, within Dsui_1729at 1820.358 kb on + strand, within Dsui_1729at 1820.455 kb on + strand, within Dsui_1729at 1820.467 kb on + strand, within Dsui_1729at 1820.676 kb on + strandat 1820.684 kb on - strandat 1820.777 kb on - strand, within Dsui_1730at 1820.777 kb on - strand, within Dsui_1730at 1820.814 kb on + strand, within Dsui_1730at 1820.894 kb on - strand, within Dsui_1730at 1820.992 kb on - strandat 1821.008 kb on + strandat 1821.008 kb on + strandat 1821.016 kb on - strandat 1821.084 kb on - strandat 1821.236 kb on + strand, within Dsui_1731at 1821.244 kb on - strand, within Dsui_1731at 1821.385 kb on + strand, within Dsui_1731at 1821.405 kb on - strand, within Dsui_1731at 1821.446 kb on + strand, within Dsui_1731at 1821.475 kb on + strand, within Dsui_1731at 1821.493 kb on - strand, within Dsui_1731at 1821.516 kb on - strand, within Dsui_1731at 1821.589 kb on + strand, within Dsui_1731at 1821.614 kb on - strand, within Dsui_1731at 1821.615 kb on - strand, within Dsui_1731at 1821.639 kb on + strand, within Dsui_1731at 1821.639 kb on + strand, within Dsui_1731at 1821.639 kb on + strand, within Dsui_1731

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,819,220 + +0.7
1,819,378 + Dsui_1728 0.15 +1.4
1,819,383 + Dsui_1728 0.16 +0.8
1,819,502 - Dsui_1728 0.30 -0.9
1,819,610 + Dsui_1728 0.43 +1.8
1,819,613 - Dsui_1728 0.43 +1.5
1,819,620 + Dsui_1728 0.44 +1.3
1,819,678 + Dsui_1728 0.51 +0.5
1,819,686 - Dsui_1728 0.52 +0.4
1,819,761 - Dsui_1728 0.60 +0.3
1,819,814 + Dsui_1728 0.67 +1.1
1,819,839 - Dsui_1728 0.70 +0.5
1,819,841 + Dsui_1728 0.70 +1.1
1,819,846 + Dsui_1728 0.70 +1.0
1,819,959 - Dsui_1728 0.84 +1.0
1,820,103 + +1.3
1,820,110 - +0.7
1,820,186 + +0.6
1,820,235 - Dsui_1729 0.13 +1.3
1,820,239 + Dsui_1729 0.14 +0.7
1,820,247 - Dsui_1729 0.16 +1.0
1,820,247 - Dsui_1729 0.16 +1.7
1,820,286 + Dsui_1729 0.24 +1.2
1,820,341 + Dsui_1729 0.36 +0.9
1,820,358 + Dsui_1729 0.40 +0.4
1,820,455 + Dsui_1729 0.60 +0.9
1,820,467 + Dsui_1729 0.63 +0.1
1,820,676 + +0.2
1,820,684 - +0.6
1,820,777 - Dsui_1730 0.34 -3.3
1,820,777 - Dsui_1730 0.34 -3.3
1,820,814 + Dsui_1730 0.47 -1.4
1,820,894 - Dsui_1730 0.74 +1.2
1,820,992 - +0.1
1,821,008 + -0.7
1,821,008 + +0.4
1,821,016 - +1.9
1,821,084 - +0.8
1,821,236 + Dsui_1731 0.22 -1.8
1,821,244 - Dsui_1731 0.23 +0.6
1,821,385 + Dsui_1731 0.43 -0.9
1,821,405 - Dsui_1731 0.46 +0.5
1,821,446 + Dsui_1731 0.51 +0.6
1,821,475 + Dsui_1731 0.55 -0.3
1,821,493 - Dsui_1731 0.58 +0.5
1,821,516 - Dsui_1731 0.61 +0.6
1,821,589 + Dsui_1731 0.71 +0.7
1,821,614 - Dsui_1731 0.75 +0.1
1,821,615 - Dsui_1731 0.75 +0.8
1,821,639 + Dsui_1731 0.78 -0.4
1,821,639 + Dsui_1731 0.78 -0.1
1,821,639 + Dsui_1731 0.78 -0.4

Or see this region's nucleotide sequence