Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1007 and Dsui_1008 are separated by 63 nucleotides Dsui_1008 and Dsui_1009 are separated by 121 nucleotides Dsui_1009 and Dsui_1010 are separated by 141 nucleotides
Dsui_1007: Dsui_1007 - arabinose efflux permease family protein, at 1,034,396 to 1,035,610
_1007
Dsui_1008: Dsui_1008 - Uncharacterized protein conserved in bacteria (DUF2242), at 1,035,674 to 1,036,201
_1008
Dsui_1009: Dsui_1009 - PAS domain S-box, at 1,036,323 to 1,040,168
_1009
Dsui_1010: Dsui_1010 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,040,310 to 1,041,413
_1010
Position (kb)
1036
1037
1038
1039
1040
1041 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1035.341 kb on + strand, within Dsui_1007 at 1035.426 kb on + strand, within Dsui_1007 at 1035.488 kb on - strand, within Dsui_1007 at 1035.612 kb on - strand at 1035.797 kb on - strand, within Dsui_1008 at 1035.894 kb on + strand, within Dsui_1008 at 1035.965 kb on - strand, within Dsui_1008 at 1036.016 kb on - strand, within Dsui_1008 at 1036.094 kb on - strand, within Dsui_1008 at 1036.159 kb on + strand at 1036.165 kb on + strand at 1036.169 kb on + strand at 1036.169 kb on + strand at 1036.174 kb on + strand at 1036.182 kb on - strand at 1036.320 kb on + strand at 1036.320 kb on + strand at 1036.333 kb on - strand at 1036.349 kb on + strand at 1036.357 kb on - strand at 1036.537 kb on - strand at 1036.617 kb on - strand at 1036.691 kb on - strand at 1036.750 kb on - strand, within Dsui_1009 at 1036.750 kb on - strand, within Dsui_1009 at 1036.796 kb on - strand, within Dsui_1009 at 1036.912 kb on - strand, within Dsui_1009 at 1037.025 kb on - strand, within Dsui_1009 at 1037.113 kb on - strand, within Dsui_1009 at 1037.129 kb on + strand, within Dsui_1009 at 1037.137 kb on - strand, within Dsui_1009 at 1037.138 kb on - strand at 1037.143 kb on + strand, within Dsui_1009 at 1037.177 kb on + strand at 1037.210 kb on - strand, within Dsui_1009 at 1037.234 kb on - strand, within Dsui_1009 at 1037.302 kb on - strand, within Dsui_1009 at 1037.489 kb on + strand, within Dsui_1009 at 1037.532 kb on - strand, within Dsui_1009 at 1037.534 kb on + strand, within Dsui_1009 at 1037.844 kb on - strand, within Dsui_1009 at 1037.849 kb on - strand, within Dsui_1009 at 1037.852 kb on + strand, within Dsui_1009 at 1037.859 kb on + strand, within Dsui_1009 at 1037.867 kb on - strand at 1037.953 kb on + strand at 1038.079 kb on + strand, within Dsui_1009 at 1038.110 kb on + strand, within Dsui_1009 at 1038.118 kb on - strand, within Dsui_1009 at 1038.118 kb on - strand, within Dsui_1009 at 1038.119 kb on + strand, within Dsui_1009 at 1038.128 kb on - strand, within Dsui_1009 at 1038.172 kb on + strand, within Dsui_1009 at 1038.177 kb on + strand, within Dsui_1009 at 1038.180 kb on - strand, within Dsui_1009 at 1038.180 kb on - strand, within Dsui_1009 at 1038.185 kb on - strand, within Dsui_1009 at 1038.428 kb on - strand, within Dsui_1009 at 1038.433 kb on - strand, within Dsui_1009 at 1038.486 kb on + strand, within Dsui_1009 at 1038.654 kb on + strand, within Dsui_1009 at 1038.670 kb on - strand, within Dsui_1009 at 1038.750 kb on - strand, within Dsui_1009 at 1038.777 kb on + strand, within Dsui_1009 at 1038.782 kb on + strand, within Dsui_1009 at 1038.806 kb on + strand, within Dsui_1009 at 1038.851 kb on - strand at 1038.936 kb on + strand, within Dsui_1009 at 1039.018 kb on + strand, within Dsui_1009 at 1039.044 kb on - strand at 1039.151 kb on - strand, within Dsui_1009 at 1039.510 kb on - strand, within Dsui_1009 at 1039.560 kb on - strand, within Dsui_1009 at 1039.597 kb on - strand, within Dsui_1009 at 1039.733 kb on + strand, within Dsui_1009 at 1039.759 kb on - strand, within Dsui_1009 at 1039.759 kb on - strand, within Dsui_1009 at 1039.873 kb on - strand at 1039.917 kb on - strand at 1039.969 kb on - strand at 1039.969 kb on - strand at 1040.005 kb on + strand at 1040.119 kb on - strand at 1040.167 kb on + strand at 1040.211 kb on + strand at 1040.336 kb on - strand at 1040.351 kb on + strand at 1040.372 kb on + strand at 1040.424 kb on + strand, within Dsui_1010 at 1040.429 kb on + strand, within Dsui_1010 at 1040.429 kb on + strand, within Dsui_1010 at 1040.675 kb on + strand, within Dsui_1010 at 1040.741 kb on - strand, within Dsui_1010 at 1040.774 kb on - strand, within Dsui_1010 at 1040.781 kb on - strand, within Dsui_1010 at 1040.844 kb on - strand, within Dsui_1010 at 1040.895 kb on + strand, within Dsui_1010 at 1040.911 kb on - strand, within Dsui_1010 at 1040.977 kb on - strand, within Dsui_1010
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 1,035,341 + Dsui_1007 0.78 +0.0 1,035,426 + Dsui_1007 0.85 -0.8 1,035,488 - Dsui_1007 0.90 +0.2 1,035,612 - -2.2 1,035,797 - Dsui_1008 0.23 +2.4 1,035,894 + Dsui_1008 0.42 -0.6 1,035,965 - Dsui_1008 0.55 +0.8 1,036,016 - Dsui_1008 0.65 +1.0 1,036,094 - Dsui_1008 0.80 +1.1 1,036,159 + +0.9 1,036,165 + +1.0 1,036,169 + +0.6 1,036,169 + +1.5 1,036,174 + +0.5 1,036,182 - +0.5 1,036,320 + +0.0 1,036,320 + +0.2 1,036,333 - -0.4 1,036,349 + -0.2 1,036,357 - +0.4 1,036,537 - +1.0 1,036,617 - +0.7 1,036,691 - +0.9 1,036,750 - Dsui_1009 0.11 +1.1 1,036,750 - Dsui_1009 0.11 +1.2 1,036,796 - Dsui_1009 0.12 +1.6 1,036,912 - Dsui_1009 0.15 +1.5 1,037,025 - Dsui_1009 0.18 +1.2 1,037,113 - Dsui_1009 0.21 +1.7 1,037,129 + Dsui_1009 0.21 +1.7 1,037,137 - Dsui_1009 0.21 +0.8 1,037,138 - +1.2 1,037,143 + Dsui_1009 0.21 +0.1 1,037,177 + +0.6 1,037,210 - Dsui_1009 0.23 +0.7 1,037,234 - Dsui_1009 0.24 +1.7 1,037,302 - Dsui_1009 0.25 +0.5 1,037,489 + Dsui_1009 0.30 +1.1 1,037,532 - Dsui_1009 0.31 +0.4 1,037,534 + Dsui_1009 0.31 -1.0 1,037,844 - Dsui_1009 0.40 +0.9 1,037,849 - Dsui_1009 0.40 +0.8 1,037,852 + Dsui_1009 0.40 +0.0 1,037,859 + Dsui_1009 0.40 +0.4 1,037,867 - +1.4 1,037,953 + +1.4 1,038,079 + Dsui_1009 0.46 -1.3 1,038,110 + Dsui_1009 0.46 +0.8 1,038,118 - Dsui_1009 0.47 +0.6 1,038,118 - Dsui_1009 0.47 +0.1 1,038,119 + Dsui_1009 0.47 +0.0 1,038,128 - Dsui_1009 0.47 -2.2 1,038,172 + Dsui_1009 0.48 +0.4 1,038,177 + Dsui_1009 0.48 +1.3 1,038,180 - Dsui_1009 0.48 +0.8 1,038,180 - Dsui_1009 0.48 +2.1 1,038,185 - Dsui_1009 0.48 +0.9 1,038,428 - Dsui_1009 0.55 +1.2 1,038,433 - Dsui_1009 0.55 +1.3 1,038,486 + Dsui_1009 0.56 +0.0 1,038,654 + Dsui_1009 0.61 +0.4 1,038,670 - Dsui_1009 0.61 +1.3 1,038,750 - Dsui_1009 0.63 +1.2 1,038,777 + Dsui_1009 0.64 -0.1 1,038,782 + Dsui_1009 0.64 +1.2 1,038,806 + Dsui_1009 0.65 -0.1 1,038,851 - -1.5 1,038,936 + Dsui_1009 0.68 -1.5 1,039,018 + Dsui_1009 0.70 +0.4 1,039,044 - +0.7 1,039,151 - Dsui_1009 0.74 +1.8 1,039,510 - Dsui_1009 0.83 +1.4 1,039,560 - Dsui_1009 0.84 +1.1 1,039,597 - Dsui_1009 0.85 +1.5 1,039,733 + Dsui_1009 0.89 +0.3 1,039,759 - Dsui_1009 0.89 +0.1 1,039,759 - Dsui_1009 0.89 +1.7 1,039,873 - +0.8 1,039,917 - +1.4 1,039,969 - +1.0 1,039,969 - +0.6 1,040,005 + +0.2 1,040,119 - +0.9 1,040,167 + +0.5 1,040,211 + +1.7 1,040,336 - +0.5 1,040,351 + +2.0 1,040,372 + +0.9 1,040,424 + Dsui_1010 0.10 +0.2 1,040,429 + Dsui_1010 0.11 +1.2 1,040,429 + Dsui_1010 0.11 -0.1 1,040,675 + Dsui_1010 0.33 +0.1 1,040,741 - Dsui_1010 0.39 +1.1 1,040,774 - Dsui_1010 0.42 +1.3 1,040,781 - Dsui_1010 0.43 +1.5 1,040,844 - Dsui_1010 0.48 +0.8 1,040,895 + Dsui_1010 0.53 +1.0 1,040,911 - Dsui_1010 0.54 +1.1 1,040,977 - Dsui_1010 0.60 +0.6
Or see this region's nucleotide sequence