Strain Fitness in Dechlorosoma suillum PS around Dsui_0896

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0894 and Dsui_0895 are separated by 83 nucleotidesDsui_0895 and Dsui_0896 are separated by 18 nucleotidesDsui_0896 and Dsui_0897 are separated by 117 nucleotides Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899 _0894 Dsui_0895: Dsui_0895 - nitrogen regulatory protein PII, at 910,983 to 911,321 _0895 Dsui_0896: Dsui_0896 - heavy metal efflux pump, cobalt-zinc-cadmium, at 911,340 to 914,450 _0896 Dsui_0897: Dsui_0897 - RND family efflux transporter, MFP subunit, at 914,568 to 915,755 _0897 Position (kb) 911 912 913 914 915Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 910.357 kb on + strand, within Dsui_0894at 910.402 kb on + strand, within Dsui_0894at 910.460 kb on + strand, within Dsui_0894at 910.512 kb on + strand, within Dsui_0894at 910.592 kb on - strand, within Dsui_0894at 910.631 kb on + strand, within Dsui_0894at 910.631 kb on + strand, within Dsui_0894at 910.641 kb on + strandat 910.658 kb on - strandat 910.667 kb on + strandat 910.727 kb on - strandat 910.916 kb on - strandat 911.155 kb on - strand, within Dsui_0895at 911.155 kb on - strand, within Dsui_0895at 911.155 kb on - strand, within Dsui_0895at 911.182 kb on - strand, within Dsui_0895at 911.274 kb on - strand, within Dsui_0895at 911.278 kb on - strand, within Dsui_0895at 911.331 kb on + strandat 911.331 kb on + strandat 911.373 kb on + strandat 911.380 kb on - strandat 911.398 kb on - strandat 911.405 kb on + strandat 911.405 kb on - strandat 911.410 kb on - strandat 911.413 kb on - strandat 911.420 kb on - strandat 911.551 kb on - strandat 911.628 kb on - strandat 911.638 kb on - strandat 911.735 kb on + strand, within Dsui_0896at 911.786 kb on + strandat 911.794 kb on - strandat 911.824 kb on + strand, within Dsui_0896at 911.873 kb on + strand, within Dsui_0896at 911.948 kb on + strandat 911.951 kb on - strand, within Dsui_0896at 912.029 kb on + strand, within Dsui_0896at 912.070 kb on - strand, within Dsui_0896at 912.089 kb on - strand, within Dsui_0896at 912.199 kb on + strand, within Dsui_0896at 912.238 kb on + strand, within Dsui_0896at 912.332 kb on + strandat 912.380 kb on - strandat 912.380 kb on - strand, within Dsui_0896at 912.465 kb on + strand, within Dsui_0896at 912.484 kb on + strand, within Dsui_0896at 912.484 kb on + strand, within Dsui_0896at 912.554 kb on + strand, within Dsui_0896at 912.562 kb on - strand, within Dsui_0896at 912.665 kb on + strand, within Dsui_0896at 912.667 kb on - strand, within Dsui_0896at 912.687 kb on - strand, within Dsui_0896at 912.762 kb on + strand, within Dsui_0896at 912.772 kb on + strandat 912.824 kb on + strand, within Dsui_0896at 912.832 kb on - strandat 912.874 kb on - strand, within Dsui_0896at 912.877 kb on + strand, within Dsui_0896at 912.941 kb on + strand, within Dsui_0896at 912.949 kb on - strand, within Dsui_0896at 912.967 kb on + strand, within Dsui_0896at 912.977 kb on + strand, within Dsui_0896at 913.047 kb on - strand, within Dsui_0896at 913.215 kb on + strand, within Dsui_0896at 913.220 kb on + strand, within Dsui_0896at 913.291 kb on - strand, within Dsui_0896at 913.292 kb on - strand, within Dsui_0896at 913.302 kb on + strand, within Dsui_0896at 913.406 kb on + strand, within Dsui_0896at 913.428 kb on - strand, within Dsui_0896at 913.432 kb on + strand, within Dsui_0896at 913.432 kb on + strand, within Dsui_0896at 913.450 kb on - strand, within Dsui_0896at 913.461 kb on + strand, within Dsui_0896at 913.495 kb on - strand, within Dsui_0896at 913.645 kb on - strandat 913.659 kb on + strand, within Dsui_0896at 913.659 kb on + strand, within Dsui_0896at 913.667 kb on - strand, within Dsui_0896at 913.673 kb on - strand, within Dsui_0896at 913.735 kb on - strand, within Dsui_0896at 913.778 kb on + strand, within Dsui_0896at 913.840 kb on - strand, within Dsui_0896at 913.855 kb on + strand, within Dsui_0896at 913.945 kb on + strandat 913.953 kb on - strand, within Dsui_0896at 913.953 kb on - strand, within Dsui_0896at 913.958 kb on - strand, within Dsui_0896at 913.958 kb on - strand, within Dsui_0896at 914.015 kb on + strand, within Dsui_0896at 914.015 kb on + strandat 914.039 kb on + strand, within Dsui_0896at 914.066 kb on + strand, within Dsui_0896at 914.066 kb on + strand, within Dsui_0896at 914.080 kb on + strand, within Dsui_0896at 914.162 kb on + strandat 914.163 kb on + strandat 914.166 kb on - strandat 914.191 kb on - strandat 914.300 kb on - strandat 914.468 kb on + strandat 914.617 kb on - strandat 914.645 kb on + strandat 914.712 kb on + strand, within Dsui_0897at 914.802 kb on - strand, within Dsui_0897at 914.874 kb on + strandat 914.876 kb on + strand, within Dsui_0897at 914.889 kb on + strandat 914.897 kb on + strand, within Dsui_0897at 914.983 kb on + strandat 915.059 kb on - strand, within Dsui_0897at 915.079 kb on + strandat 915.112 kb on - strand, within Dsui_0897at 915.340 kb on - strand, within Dsui_0897at 915.340 kb on - strand, within Dsui_0897at 915.421 kb on + strand, within Dsui_0897at 915.428 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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910,357 + Dsui_0894 0.79 +0.3
910,402 + Dsui_0894 0.81 +0.2
910,460 + Dsui_0894 0.83 +0.1
910,512 + Dsui_0894 0.85 -1.0
910,592 - Dsui_0894 0.88 +0.5
910,631 + Dsui_0894 0.90 +1.8
910,631 + Dsui_0894 0.90 +0.6
910,641 + -0.2
910,658 - -3.6
910,667 + +0.6
910,727 - -1.0
910,916 - +0.4
911,155 - Dsui_0895 0.51 +0.4
911,155 - Dsui_0895 0.51 +0.0
911,155 - Dsui_0895 0.51 -2.7
911,182 - Dsui_0895 0.59 +0.5
911,274 - Dsui_0895 0.86 -0.1
911,278 - Dsui_0895 0.87 +0.8
911,331 + -3.0
911,331 + +0.5
911,373 + +1.3
911,380 - +0.8
911,398 - -0.7
911,405 + -0.2
911,405 - +0.6
911,410 - +1.3
911,413 - -0.4
911,420 - -0.5
911,551 - -1.3
911,628 - +0.1
911,638 - +1.4
911,735 + Dsui_0896 0.13 -1.2
911,786 + -0.7
911,794 - +0.7
911,824 + Dsui_0896 0.16 +1.1
911,873 + Dsui_0896 0.17 -0.4
911,948 + +0.6
911,951 - Dsui_0896 0.20 -0.4
912,029 + Dsui_0896 0.22 -1.6
912,070 - Dsui_0896 0.23 -0.2
912,089 - Dsui_0896 0.24 +1.3
912,199 + Dsui_0896 0.28 +0.0
912,238 + Dsui_0896 0.29 -1.5
912,332 + -0.1
912,380 - +0.1
912,380 - Dsui_0896 0.33 +0.1
912,465 + Dsui_0896 0.36 +1.1
912,484 + Dsui_0896 0.37 -0.5
912,484 + Dsui_0896 0.37 +0.6
912,554 + Dsui_0896 0.39 +1.9
912,562 - Dsui_0896 0.39 -0.1
912,665 + Dsui_0896 0.43 +1.0
912,667 - Dsui_0896 0.43 +0.5
912,687 - Dsui_0896 0.43 +0.5
912,762 + Dsui_0896 0.46 -0.7
912,772 + -1.3
912,824 + Dsui_0896 0.48 +0.1
912,832 - +2.9
912,874 - Dsui_0896 0.49 -0.1
912,877 + Dsui_0896 0.49 +0.1
912,941 + Dsui_0896 0.51 +0.2
912,949 - Dsui_0896 0.52 +0.7
912,967 + Dsui_0896 0.52 -0.1
912,977 + Dsui_0896 0.53 -0.2
913,047 - Dsui_0896 0.55 -0.1
913,215 + Dsui_0896 0.60 +0.8
913,220 + Dsui_0896 0.60 +0.1
913,291 - Dsui_0896 0.63 +0.5
913,292 - Dsui_0896 0.63 +1.5
913,302 + Dsui_0896 0.63 +0.1
913,406 + Dsui_0896 0.66 +0.3
913,428 - Dsui_0896 0.67 -0.5
913,432 + Dsui_0896 0.67 +1.3
913,432 + Dsui_0896 0.67 -0.2
913,450 - Dsui_0896 0.68 +1.2
913,461 + Dsui_0896 0.68 -0.8
913,495 - Dsui_0896 0.69 -0.2
913,645 - +0.5
913,659 + Dsui_0896 0.75 +0.7
913,659 + Dsui_0896 0.75 -0.0
913,667 - Dsui_0896 0.75 +0.9
913,673 - Dsui_0896 0.75 +0.4
913,735 - Dsui_0896 0.77 +0.3
913,778 + Dsui_0896 0.78 -0.8
913,840 - Dsui_0896 0.80 -0.2
913,855 + Dsui_0896 0.81 -0.4
913,945 + -2.4
913,953 - Dsui_0896 0.84 +0.3
913,953 - Dsui_0896 0.84 -0.0
913,958 - Dsui_0896 0.84 +0.5
913,958 - Dsui_0896 0.84 -0.2
914,015 + Dsui_0896 0.86 +0.2
914,015 + -2.7
914,039 + Dsui_0896 0.87 +0.0
914,066 + Dsui_0896 0.88 +1.2
914,066 + Dsui_0896 0.88 +1.5
914,080 + Dsui_0896 0.88 +0.3
914,162 + -1.1
914,163 + -1.0
914,166 - +1.6
914,191 - -2.1
914,300 - +0.8
914,468 + -0.4
914,617 - +0.7
914,645 + -0.5
914,712 + Dsui_0897 0.12 -1.7
914,802 - Dsui_0897 0.20 +0.1
914,874 + +0.2
914,876 + Dsui_0897 0.26 -0.1
914,889 + -0.7
914,897 + Dsui_0897 0.28 -1.0
914,983 + +0.3
915,059 - Dsui_0897 0.41 -0.2
915,079 + -1.2
915,112 - Dsui_0897 0.46 +0.4
915,340 - Dsui_0897 0.65 +0.5
915,340 - Dsui_0897 0.65 +0.1
915,421 + Dsui_0897 0.72 -0.2
915,428 + -0.4

Or see this region's nucleotide sequence