Strain Fitness in Dechlorosoma suillum PS around Dsui_0843

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0842 and Dsui_0843 overlap by 4 nucleotidesDsui_0843 and Dsui_0844 are separated by 79 nucleotides Dsui_0842: Dsui_0842 - ABC-type branched-chain amino acid transport systems, ATPase component, at 857,112 to 858,893 _0842 Dsui_0843: Dsui_0843 - branched-chain amino acid ABC-type transport system, permease component, at 858,890 to 859,939 _0843 Dsui_0844: Dsui_0844 - ABC-type branched-chain amino acid transport system, periplasmic component, at 860,019 to 861,173 _0844 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1 2 3at 857.993 kb on - strand, within Dsui_0842at 858.084 kb on - strand, within Dsui_0842at 858.128 kb on - strand, within Dsui_0842at 858.133 kb on + strandat 858.164 kb on - strand, within Dsui_0842at 858.300 kb on - strand, within Dsui_0842at 858.300 kb on - strand, within Dsui_0842at 858.336 kb on + strand, within Dsui_0842at 858.415 kb on - strand, within Dsui_0842at 858.415 kb on - strand, within Dsui_0842at 858.453 kb on - strand, within Dsui_0842at 858.455 kb on - strand, within Dsui_0842at 858.521 kb on - strand, within Dsui_0842at 858.523 kb on - strand, within Dsui_0842at 858.528 kb on + strand, within Dsui_0842at 858.541 kb on - strand, within Dsui_0842at 858.549 kb on - strand, within Dsui_0842at 858.586 kb on + strand, within Dsui_0842at 858.622 kb on - strand, within Dsui_0842at 858.638 kb on + strand, within Dsui_0842at 858.794 kb on - strandat 858.808 kb on - strandat 858.913 kb on + strandat 858.921 kb on - strandat 858.927 kb on - strandat 859.215 kb on + strand, within Dsui_0843at 859.260 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.265 kb on + strand, within Dsui_0843at 859.266 kb on - strand, within Dsui_0843at 859.268 kb on - strand, within Dsui_0843at 859.273 kb on - strand, within Dsui_0843at 859.273 kb on - strand, within Dsui_0843at 859.273 kb on - strand, within Dsui_0843at 859.346 kb on - strand, within Dsui_0843at 859.397 kb on + strand, within Dsui_0843at 859.426 kb on + strand, within Dsui_0843at 859.515 kb on + strand, within Dsui_0843at 859.586 kb on + strand, within Dsui_0843at 859.637 kb on - strand, within Dsui_0843at 859.696 kb on - strand, within Dsui_0843at 859.696 kb on - strand, within Dsui_0843at 859.714 kb on + strand, within Dsui_0843at 859.722 kb on - strand, within Dsui_0843at 859.744 kb on + strand, within Dsui_0843at 859.752 kb on - strand, within Dsui_0843at 859.786 kb on + strand, within Dsui_0843at 859.786 kb on + strand, within Dsui_0843at 859.794 kb on - strand, within Dsui_0843at 859.795 kb on - strand, within Dsui_0843at 859.861 kb on + strandat 859.861 kb on + strandat 859.959 kb on + strandat 859.967 kb on - strandat 859.969 kb on - strandat 860.000 kb on - strandat 860.030 kb on + strandat 860.038 kb on - strandat 860.075 kb on + strandat 860.157 kb on + strand, within Dsui_0844at 860.177 kb on + strand, within Dsui_0844at 860.188 kb on + strand, within Dsui_0844at 860.196 kb on - strand, within Dsui_0844at 860.199 kb on + strand, within Dsui_0844at 860.240 kb on + strand, within Dsui_0844at 860.248 kb on - strand, within Dsui_0844at 860.283 kb on + strand, within Dsui_0844at 860.290 kb on + strand, within Dsui_0844at 860.317 kb on - strand, within Dsui_0844at 860.399 kb on - strand, within Dsui_0844at 860.467 kb on + strand, within Dsui_0844at 860.475 kb on - strand, within Dsui_0844at 860.567 kb on - strand, within Dsui_0844at 860.653 kb on + strand, within Dsui_0844at 860.709 kb on + strand, within Dsui_0844at 860.768 kb on + strand, within Dsui_0844

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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857,993 - Dsui_0842 0.49 +0.8
858,084 - Dsui_0842 0.55 +1.5
858,128 - Dsui_0842 0.57 -2.3
858,133 + -1.8
858,164 - Dsui_0842 0.59 -0.2
858,300 - Dsui_0842 0.67 +0.1
858,300 - Dsui_0842 0.67 +0.8
858,336 + Dsui_0842 0.69 -0.3
858,415 - Dsui_0842 0.73 +0.1
858,415 - Dsui_0842 0.73 +0.9
858,453 - Dsui_0842 0.75 +1.0
858,455 - Dsui_0842 0.75 +0.8
858,521 - Dsui_0842 0.79 +0.9
858,523 - Dsui_0842 0.79 -1.1
858,528 + Dsui_0842 0.79 -0.9
858,541 - Dsui_0842 0.80 +2.5
858,549 - Dsui_0842 0.81 +0.9
858,586 + Dsui_0842 0.83 +0.2
858,622 - Dsui_0842 0.85 +1.0
858,638 + Dsui_0842 0.86 -0.4
858,794 - +0.7
858,808 - +1.0
858,913 + -1.4
858,921 - +1.1
858,927 - +0.9
859,215 + Dsui_0843 0.31 +0.1
859,260 + Dsui_0843 0.35 -0.6
859,265 + Dsui_0843 0.36 -0.2
859,265 + Dsui_0843 0.36 -0.1
859,265 + Dsui_0843 0.36 +1.0
859,265 + Dsui_0843 0.36 +0.6
859,265 + Dsui_0843 0.36 +0.4
859,265 + Dsui_0843 0.36 -0.4
859,266 - Dsui_0843 0.36 +1.4
859,268 - Dsui_0843 0.36 +0.1
859,273 - Dsui_0843 0.36 +1.4
859,273 - Dsui_0843 0.36 +0.6
859,273 - Dsui_0843 0.36 +0.9
859,346 - Dsui_0843 0.43 -0.6
859,397 + Dsui_0843 0.48 +0.7
859,426 + Dsui_0843 0.51 +0.1
859,515 + Dsui_0843 0.60 +0.6
859,586 + Dsui_0843 0.66 +0.5
859,637 - Dsui_0843 0.71 +0.4
859,696 - Dsui_0843 0.77 +1.0
859,696 - Dsui_0843 0.77 +0.7
859,714 + Dsui_0843 0.78 -0.1
859,722 - Dsui_0843 0.79 +1.0
859,744 + Dsui_0843 0.81 +1.1
859,752 - Dsui_0843 0.82 +0.8
859,786 + Dsui_0843 0.85 -0.5
859,786 + Dsui_0843 0.85 +0.3
859,794 - Dsui_0843 0.86 +0.8
859,795 - Dsui_0843 0.86 +1.9
859,861 + +0.6
859,861 + +0.4
859,959 + +0.4
859,967 - +1.4
859,969 - +0.7
860,000 - +1.7
860,030 + +0.5
860,038 - +1.2
860,075 + +0.7
860,157 + Dsui_0844 0.12 +0.7
860,177 + Dsui_0844 0.14 +1.1
860,188 + Dsui_0844 0.15 +0.3
860,196 - Dsui_0844 0.15 +0.7
860,199 + Dsui_0844 0.16 +1.1
860,240 + Dsui_0844 0.19 +0.7
860,248 - Dsui_0844 0.20 -0.5
860,283 + Dsui_0844 0.23 +1.2
860,290 + Dsui_0844 0.23 +0.6
860,317 - Dsui_0844 0.26 +0.7
860,399 - Dsui_0844 0.33 +2.4
860,467 + Dsui_0844 0.39 +0.0
860,475 - Dsui_0844 0.39 +1.5
860,567 - Dsui_0844 0.47 +0.3
860,653 + Dsui_0844 0.55 -0.1
860,709 + Dsui_0844 0.60 +1.0
860,768 + Dsui_0844 0.65 +3.4

Or see this region's nucleotide sequence