Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19495

Experiment: ICP1_phage_0.23_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_0.23_MOI_rep1
1,034,489	+		CSW01_19490	0.49	+1.6
1,034,581	+		CSW01_19490	0.54	+1.6
1,034,582	+		CSW01_19490	0.54	+0.8
1,034,582	+		CSW01_19490	0.54	-1.7
1,034,590	-		CSW01_19490	0.54	-0.1
1,034,590	-		CSW01_19490	0.54	+0.6
1,034,590	-		CSW01_19490	0.54	-2.9
1,034,686	-		CSW01_19490	0.59	+0.5
1,034,705	+		CSW01_19490	0.60	-0.1
1,034,738	+		CSW01_19490	0.62	+0.8
1,034,812	+		CSW01_19490	0.66	-0.3
1,034,880	-		CSW01_19490	0.69	+1.1
1,034,929	+		CSW01_19490	0.72	-2.0
1,034,929	+		CSW01_19490	0.72	+0.4
1,034,937	-		CSW01_19490	0.72	-1.2
1,034,937	-		CSW01_19490	0.72	-0.7
1,034,937	-		CSW01_19490	0.72	-2.1
1,034,939	+		CSW01_19490	0.72	-3.5
1,034,939	+		CSW01_19490	0.72	-1.9
1,034,939	+		CSW01_19490	0.72	-1.2
1,034,939	+		CSW01_19490	0.72	-0.6
1,034,939	+		CSW01_19490	0.72	+0.3
1,034,939	+		CSW01_19490	0.72	+0.4
1,034,947	-		CSW01_19490	0.73	-1.9
1,034,947	-		CSW01_19490	0.73	-1.0
1,034,947	-		CSW01_19490	0.73	+0.4
1,034,947	-		CSW01_19490	0.73	+0.1
1,034,947	-		CSW01_19490	0.73	-2.4
1,034,971	+		CSW01_19490	0.74	-1.2
1,035,011	+		CSW01_19490	0.76	+0.4
1,035,049	-		CSW01_19490	0.78	-4.1
1,035,079	+		CSW01_19490	0.80	-1.3
1,035,158	+		CSW01_19490	0.84	-1.3
1,035,158	+		CSW01_19490	0.84	+0.3
1,035,158	+		CSW01_19490	0.84	-1.0
1,035,158	+		CSW01_19490	0.84	+0.4
1,035,166	-		CSW01_19490	0.84	+1.4
1,035,166	-		CSW01_19490	0.84	+1.6
1,035,166	-		CSW01_19490	0.84	+0.8
1,035,166	-		CSW01_19490	0.84	-0.4
1,035,196	-		CSW01_19490	0.86	-0.0
1,035,325	+				-0.4
1,035,354	+				+1.6
1,035,362	-				-1.2
1,035,390	-				-2.1
1,035,472	+				-1.4
1,035,472	+				-2.3
1,035,472	+				-2.0
1,035,472	+				+0.2
1,035,480	-				+1.5
1,035,480	-				+0.9
1,035,480	-				-0.2
1,035,480	-				+0.5
1,035,556	+				+0.5
1,035,621	+				-0.7
1,035,621	+				+0.5
1,035,629	-				-0.9
1,035,676	+				+0.4
1,035,697	+		CSW01_19495	0.10	-0.6
1,035,705	-		CSW01_19495	0.11	-0.2
1,035,705	-		CSW01_19495	0.11	-1.4
1,036,050	+		CSW01_19495	0.27	-2.5
1,036,067	+		CSW01_19495	0.28	+0.2
1,036,117	+		CSW01_19495	0.30	+0.1
1,036,133	-		CSW01_19495	0.31	+0.5
1,036,133	-		CSW01_19495	0.31	+0.8
1,036,162	-		CSW01_19495	0.32	-0.4
1,036,172	+		CSW01_19495	0.33	-3.6
1,036,222	-		CSW01_19495	0.35	-3.2
1,036,257	-		CSW01_19495	0.37	+0.3
1,036,318	+		CSW01_19495	0.40	+0.4
1,036,443	+		CSW01_19495	0.45	-3.6
1,036,443	+		CSW01_19495	0.45	+1.0
1,036,493	+		CSW01_19495	0.48	-0.8
1,036,587	-		CSW01_19495	0.52	-2.0
1,036,607	+		CSW01_19495	0.53	+0.5
1,036,607	+		CSW01_19495	0.53	-0.0
1,036,746	+		CSW01_19495	0.60	+0.5
1,036,746	+		CSW01_19495	0.60	+1.3
1,036,751	+		CSW01_19495	0.60	+1.6
1,036,754	-		CSW01_19495	0.60	+0.2
1,036,819	-		CSW01_19495	0.63	-2.4
1,036,865	-		CSW01_19495	0.65	+0.4
1,036,882	-		CSW01_19495	0.66	-1.4
1,036,887	-		CSW01_19495	0.66	+0.8
1,036,897	-		CSW01_19495	0.67	+0.0
1,036,897	-		CSW01_19495	0.67	-3.6
1,036,944	+		CSW01_19495	0.69	-2.1
1,036,968	-		CSW01_19495	0.70	-1.3
1,037,010	-		CSW01_19495	0.72	+0.6
1,037,038	+		CSW01_19495	0.74	+0.2
1,037,046	-		CSW01_19495	0.74	-0.6
1,037,046	-		CSW01_19495	0.74	-3.0
1,037,129	+		CSW01_19495	0.78	-3.3
1,037,129	+		CSW01_19495	0.78	+2.0
1,037,129	+		CSW01_19495	0.78	+0.1
1,037,177	-		CSW01_19495	0.80	-1.9
1,037,232	+		CSW01_19495	0.83	-0.8
1,037,273	+		CSW01_19495	0.85	+0.3
1,037,299	+		CSW01_19495	0.86	-1.5
1,037,299	+		CSW01_19495	0.86	-2.0
1,037,299	+		CSW01_19495	0.86	-2.0
1,037,299	+		CSW01_19495	0.86	-3.3
1,037,307	-		CSW01_19495	0.86	+1.4
1,037,307	-		CSW01_19495	0.86	+1.5
1,037,307	-		CSW01_19495	0.86	+2.2
1,037,314	+		CSW01_19495	0.87	+0.3
1,037,314	+		CSW01_19495	0.87	-1.4
1,037,314	+		CSW01_19495	0.87	-1.4
1,037,314	+		CSW01_19495	0.87	-0.6
1,037,322	-		CSW01_19495	0.87	+0.4
1,037,322	-		CSW01_19495	0.87	+0.5
1,037,445	+				+0.8
1,037,453	-				-2.3
1,037,493	-				+1.0
1,037,573	+				+1.1
1,037,588	+				-2.2
1,037,588	+				+1.9
1,037,588	+				+0.7
1,037,596	-				-1.5
1,037,596	-				+0.0
1,037,811	+				+0.3
1,037,868	-				+1.3
1,037,907	+		CSW01_19500	0.11	-2.2
1,038,177	+		CSW01_19500	0.27	+0.8
1,038,177	+		CSW01_19500	0.27	+0.1
1,038,177	+		CSW01_19500	0.27	-3.4
1,038,177	+		CSW01_19500	0.27	-2.2
1,038,177	+		CSW01_19500	0.27	+1.6
1,038,177	+		CSW01_19500	0.27	+1.6
1,038,185	-		CSW01_19500	0.27	-3.2
1,038,185	-		CSW01_19500	0.27	-0.9
1,038,185	-		CSW01_19500	0.27	+1.3
1,038,185	-		CSW01_19500	0.27	+0.3
1,038,185	-		CSW01_19500	0.27	+0.2
1,038,204	-		CSW01_19500	0.28	-0.2
1,038,219	+		CSW01_19500	0.29	-0.9
1,038,223	+		CSW01_19500	0.29	+1.0
1,038,230	+		CSW01_19500	0.30	+0.0
1,038,231	-		CSW01_19500	0.30	-0.1
1,038,317	-		CSW01_19500	0.35	+1.5
1,038,412	-		CSW01_19500	0.41	+2.1
1,038,422	-		CSW01_19500	0.41	-1.2
1,038,432	-		CSW01_19500	0.42	-0.7
1,038,440	+		CSW01_19500	0.42	-3.9
1,038,443	-		CSW01_19500	0.43	-2.2
1,038,459	+		CSW01_19500	0.44	-3.3
1,038,479	-		CSW01_19500	0.45	-0.2
1,038,520	-		CSW01_19500	0.47	+0.4
1,038,562	+		CSW01_19500	0.50	-2.4
1,038,583	+		CSW01_19500	0.51	-0.5
1,038,591	-		CSW01_19500	0.51	-0.5
1,038,596	-		CSW01_19500	0.52	+0.8