Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19370

Experiment: ICP1_phage_0.23_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_0.23_MOI_rep1
1,002,688	-				+1.6
1,002,708	+				+0.4
1,002,716	-				-0.7
1,002,756	+		CSW01_19365	0.11	-0.9
1,002,756	+		CSW01_19365	0.11	+2.7
1,002,756	+		CSW01_19365	0.11	-2.0
1,002,756	+		CSW01_19365	0.11	+0.3
1,002,756	+		CSW01_19365	0.11	-2.6
1,002,756	+		CSW01_19365	0.11	+0.1
1,002,756	+		CSW01_19365	0.11	+2.3
1,002,756	+		CSW01_19365	0.11	-1.7
1,002,764	-		CSW01_19365	0.12	-0.6
1,002,764	-		CSW01_19365	0.12	-0.4
1,002,764	-		CSW01_19365	0.12	-2.4
1,002,764	-		CSW01_19365	0.12	-2.0
1,002,764	-		CSW01_19365	0.12	-0.2
1,002,810	+		CSW01_19365	0.17	-3.2
1,002,810	+		CSW01_19365	0.17	-0.7
1,002,818	-		CSW01_19365	0.18	+0.3
1,002,818	-		CSW01_19365	0.18	-2.6
1,002,818	-		CSW01_19365	0.18	+1.5
1,002,854	-		CSW01_19365	0.22	-2.9
1,002,881	-		CSW01_19365	0.25	-2.4
1,002,886	-		CSW01_19365	0.26	-0.4
1,002,886	-		CSW01_19365	0.26	+0.5
1,002,886	-		CSW01_19365	0.26	-1.5
1,002,886	-		CSW01_19365	0.26	-1.4
1,002,930	+		CSW01_19365	0.30	+0.1
1,002,932	+		CSW01_19365	0.31	+1.2
1,002,932	+		CSW01_19365	0.31	+0.5
1,002,938	-		CSW01_19365	0.31	-2.9
1,002,938	-		CSW01_19365	0.31	-2.9
1,002,938	-		CSW01_19365	0.31	-0.3
1,002,940	+		CSW01_19365	0.31	+1.2
1,003,013	+		CSW01_19365	0.39	-0.3
1,003,016	-		CSW01_19365	0.40	-0.6
1,003,016	-		CSW01_19365	0.40	+0.9
1,003,021	-		CSW01_19365	0.40	-0.6
1,003,023	+		CSW01_19365	0.40	+0.5
1,003,055	+		CSW01_19365	0.44	-1.6
1,003,094	+		CSW01_19365	0.48	-3.8
1,003,167	+		CSW01_19365	0.56	+0.9
1,003,185	-		CSW01_19365	0.58	+2.3
1,003,238	+		CSW01_19365	0.64	+1.1
1,003,238	+		CSW01_19365	0.64	-3.9
1,003,246	-		CSW01_19365	0.65	-0.7
1,003,248	-		CSW01_19365	0.65	+2.2
1,003,253	+		CSW01_19365	0.65	+0.3
1,003,256	-		CSW01_19365	0.66	-0.1
1,003,261	-		CSW01_19365	0.66	-0.1
1,003,261	-		CSW01_19365	0.66	+1.4
1,003,261	-		CSW01_19365	0.66	-1.7
1,003,300	+		CSW01_19365	0.70	-3.0
1,003,308	-		CSW01_19365	0.71	-1.1
1,003,308	-		CSW01_19365	0.71	-1.4
1,003,340	-		CSW01_19365	0.75	+0.7
1,003,354	-		CSW01_19365	0.76	+1.6
1,003,397	+		CSW01_19365	0.81	+0.1
1,003,438	-		CSW01_19365	0.85	-0.0
1,003,479	-		CSW01_19365	0.90	-1.2
1,003,508	+				-0.7
1,003,516	-				+1.0
1,003,516	-				+2.0
1,003,574	-				+1.0
1,003,622	-				-0.7
1,003,638	-				+0.8
1,003,690	-				-0.6
1,003,772	+				+0.6
1,003,772	+				+0.2
1,003,785	-				-1.7
1,003,913	+		CSW01_19370	0.13	+1.2
1,003,913	+		CSW01_19370	0.13	+0.2
1,003,921	-		CSW01_19370	0.13	-1.6
1,003,961	+		CSW01_19370	0.15	+0.7
1,003,995	+		CSW01_19370	0.16	+1.7
1,003,996	+		CSW01_19370	0.16	-1.5
1,004,013	-		CSW01_19370	0.17	-0.7
1,004,013	-		CSW01_19370	0.17	-2.7
1,004,020	+		CSW01_19370	0.17	+1.7
1,004,199	+		CSW01_19370	0.25	-0.0
1,004,289	+		CSW01_19370	0.29	-1.2
1,004,360	-		CSW01_19370	0.32	-2.2
1,004,362	+		CSW01_19370	0.32	-0.3
1,004,405	+		CSW01_19370	0.34	+0.2
1,004,484	-		CSW01_19370	0.38	-1.1
1,004,519	+		CSW01_19370	0.39	-3.5
1,004,532	-		CSW01_19370	0.40	+1.2
1,004,532	-		CSW01_19370	0.40	-0.6
1,004,714	+		CSW01_19370	0.47	-0.5
1,004,748	-		CSW01_19370	0.49	-0.4
1,004,750	+		CSW01_19370	0.49	-0.1
1,004,755	+		CSW01_19370	0.49	+1.7
1,004,758	-		CSW01_19370	0.49	-0.6
1,004,758	-		CSW01_19370	0.49	-0.9
1,004,764	-		CSW01_19370	0.50	-2.0
1,004,979	+		CSW01_19370	0.59	-0.4
1,004,984	+		CSW01_19370	0.59	-2.8
1,005,004	+		CSW01_19370	0.60	+0.5
1,005,026	-		CSW01_19370	0.61	-0.3
1,005,031	-		CSW01_19370	0.61	-0.9
1,005,031	-		CSW01_19370	0.61	+0.0
1,005,036	-		CSW01_19370	0.61	-0.0
1,005,191	-		CSW01_19370	0.68	-0.6
1,005,191	-		CSW01_19370	0.68	+1.4
1,005,215	-		CSW01_19370	0.69	-0.3
1,005,215	-		CSW01_19370	0.69	+1.0
1,005,230	+		CSW01_19370	0.70	-0.6
1,005,238	-		CSW01_19370	0.70	+0.4
1,005,241	+		CSW01_19370	0.70	+0.7
1,005,257	-		CSW01_19370	0.71	-0.4
1,005,271	-		CSW01_19370	0.72	-1.2
1,005,376	+		CSW01_19370	0.76	+1.1
1,005,376	+		CSW01_19370	0.76	-2.4
1,005,376	+		CSW01_19370	0.76	-0.3
1,005,376	+		CSW01_19370	0.76	+0.4
1,005,376	+		CSW01_19370	0.76	-1.0
1,005,376	+		CSW01_19370	0.76	-1.2
1,005,376	+		CSW01_19370	0.76	+0.4
1,005,376	+		CSW01_19370	0.76	-0.1
1,005,376	+		CSW01_19370	0.76	+0.8
1,005,376	+		CSW01_19370	0.76	+0.3
1,005,376	+		CSW01_19370	0.76	+0.7
1,005,376	+		CSW01_19370	0.76	+0.2
1,005,384	-		CSW01_19370	0.76	+0.1
1,005,384	-		CSW01_19370	0.76	+0.2
1,005,384	-		CSW01_19370	0.76	-2.8
1,005,384	-		CSW01_19370	0.76	+0.1
1,005,384	-		CSW01_19370	0.76	+0.3
1,005,384	-		CSW01_19370	0.76	+0.1
1,005,384	-		CSW01_19370	0.76	+0.5
1,005,384	-		CSW01_19370	0.76	-0.2
1,005,384	-		CSW01_19370	0.76	+0.4
1,005,384	-		CSW01_19370	0.76	+1.2
1,005,391	-		CSW01_19370	0.77	+0.1
1,005,394	-		CSW01_19370	0.77	+0.2
1,005,429	+		CSW01_19370	0.78	-1.3
1,005,465	+		CSW01_19370	0.80	-1.9
1,005,474	+		CSW01_19370	0.80	-2.6
1,005,475	+		CSW01_19370	0.80	-0.1
1,005,475	+		CSW01_19370	0.80	-2.4
1,005,483	-		CSW01_19370	0.81	-0.0
1,005,483	-		CSW01_19370	0.81	-0.8
1,005,483	-		CSW01_19370	0.81	-1.9
1,005,483	-		CSW01_19370	0.81	-2.8
1,005,483	-		CSW01_19370	0.81	-2.7
1,005,483	-		CSW01_19370	0.81	-0.8
1,005,575	-		CSW01_19370	0.85	-1.7
1,005,602	+		CSW01_19370	0.86	-0.5
1,005,603	+		CSW01_19370	0.86	+2.1
1,005,603	+		CSW01_19370	0.86	-1.6
1,005,603	+		CSW01_19370	0.86	+0.1
1,005,603	+		CSW01_19370	0.86	+0.9
1,005,603	+		CSW01_19370	0.86	+0.6
1,005,603	+		CSW01_19370	0.86	+1.0
1,005,611	-		CSW01_19370	0.86	+0.7
1,005,662	-		CSW01_19370	0.88	-1.5
1,005,662	-		CSW01_19370	0.88	-2.0
1,005,668	+		CSW01_19370	0.89	+1.1
1,005,668	+		CSW01_19370	0.89	-1.5
1,005,676	-		CSW01_19370	0.89	-1.3
1,005,707	-				+1.2
1,005,727	-				+0.4
1,005,791	-				+0.4
1,005,804	-				-0.4
1,005,830	-				-3.9
1,005,840	-				+0.5
1,005,850	-				+0.4
1,005,859	+				-1.5
1,005,958	-				-1.3
1,005,962	+				-0.5
1,006,037	+				-0.3
1,006,143	-				+1.1
1,006,148	+				-3.0
1,006,260	+				+0.8
1,006,265	-				+1.1
1,006,316	+				-2.6
1,006,502	-		CSW01_19375	0.26	+0.3
1,006,502	-		CSW01_19375	0.26	+0.1
1,006,530	+		CSW01_19375	0.29	+0.8
1,006,538	-		CSW01_19375	0.31	+2.3
1,006,538	-		CSW01_19375	0.31	-0.2
1,006,540	-		CSW01_19375	0.31	+0.2
1,006,548	-		CSW01_19375	0.32	+1.7
1,006,608	-		CSW01_19375	0.40	-2.2
1,006,651	-		CSW01_19375	0.46	-1.9
1,006,659	-		CSW01_19375	0.47	-0.3
1,006,706	+		CSW01_19375	0.54	+0.4
1,006,706	+		CSW01_19375	0.54	+1.1
1,006,706	+		CSW01_19375	0.54	+1.0
1,006,706	+		CSW01_19375	0.54	+0.9
1,006,714	-		CSW01_19375	0.55	-2.4
1,006,714	-		CSW01_19375	0.55	-1.2
1,006,714	-		CSW01_19375	0.55	-1.6
1,006,714	-		CSW01_19375	0.55	-3.0
1,006,793	-		CSW01_19375	0.66	+0.6
1,006,799	-		CSW01_19375	0.67	+1.2
1,006,822	+		CSW01_19375	0.70	-1.2
1,006,898	+		CSW01_19375	0.81	+2.6
1,006,898	+		CSW01_19375	0.81	-1.6
1,006,898	+		CSW01_19375	0.81	+1.2
1,006,906	-		CSW01_19375	0.82	-2.0
1,006,906	-		CSW01_19375	0.82	-2.3
1,006,906	-		CSW01_19375	0.82	-1.2
1,006,906	-		CSW01_19375	0.82	+0.6