Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19295 and CSW01_19300 are separated by 58 nucleotides CSW01_19300 and CSW01_19305 overlap by 91 nucleotides CSW01_19305 and CSW01_19310 are separated by 300 nucleotides CSW01_19310 and CSW01_19315 are separated by 138 nucleotides
CSW01_19295: CSW01_19295 - phospho-sugar mutase, at 989,466 to 991,169
_19295
CSW01_19300: CSW01_19300 - polymer-forming cytoskeletal family protein, at 991,228 to 991,629
_19300
CSW01_19305: CSW01_19305 - M23 family peptidase, at 991,539 to 992,480
_19305
CSW01_19310: CSW01_19310 - hypothetical protein, at 992,781 to 992,924
_19310
CSW01_19315: CSW01_19315 - PTS mannitol transporter subunit IICBA, at 993,063 to 995,012
_19315
Position (kb) 991
992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 990.579 kb on + strand, within CSW01_19295 at 990.662 kb on - strand, within CSW01_19295 at 990.679 kb on - strand, within CSW01_19295 at 990.681 kb on + strand, within CSW01_19295 at 990.689 kb on - strand, within CSW01_19295 at 990.689 kb on - strand, within CSW01_19295 at 990.718 kb on - strand, within CSW01_19295 at 990.813 kb on - strand, within CSW01_19295 at 990.815 kb on + strand, within CSW01_19295 at 990.820 kb on + strand, within CSW01_19295 at 990.820 kb on + strand, within CSW01_19295 at 990.823 kb on - strand, within CSW01_19295 at 990.823 kb on - strand, within CSW01_19295 at 990.828 kb on - strand, within CSW01_19295 at 990.861 kb on - strand, within CSW01_19295 at 990.900 kb on + strand, within CSW01_19295 at 990.961 kb on + strand, within CSW01_19295 at 990.976 kb on + strand, within CSW01_19295 at 991.049 kb on + strand at 991.060 kb on + strand at 991.152 kb on + strand at 991.160 kb on - strand at 991.278 kb on + strand, within CSW01_19300 at 991.286 kb on - strand, within CSW01_19300 at 991.470 kb on + strand, within CSW01_19300 at 991.478 kb on - strand, within CSW01_19300 at 991.583 kb on + strand at 991.583 kb on + strand at 991.583 kb on + strand at 991.731 kb on + strand, within CSW01_19305 at 991.739 kb on - strand, within CSW01_19305 at 991.973 kb on - strand, within CSW01_19305 at 992.022 kb on + strand, within CSW01_19305 at 992.129 kb on + strand, within CSW01_19305 at 992.270 kb on + strand, within CSW01_19305 at 992.382 kb on - strand, within CSW01_19305 at 992.577 kb on - strand at 992.579 kb on + strand at 992.586 kb on + strand at 992.586 kb on + strand at 992.586 kb on + strand at 992.586 kb on + strand at 992.592 kb on - strand at 992.594 kb on - strand at 992.594 kb on - strand at 992.609 kb on - strand at 992.611 kb on - strand at 992.682 kb on + strand at 993.218 kb on + strand at 993.305 kb on - strand, within CSW01_19315 at 993.307 kb on - strand, within CSW01_19315 at 993.376 kb on + strand, within CSW01_19315
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 990,579 + CSW01_19295 0.65 -2.4 990,662 - CSW01_19295 0.70 -2.5 990,679 - CSW01_19295 0.71 +0.5 990,681 + CSW01_19295 0.71 +1.0 990,689 - CSW01_19295 0.72 -2.3 990,689 - CSW01_19295 0.72 -2.2 990,718 - CSW01_19295 0.73 -2.7 990,813 - CSW01_19295 0.79 +0.2 990,815 + CSW01_19295 0.79 +0.0 990,820 + CSW01_19295 0.79 -3.3 990,820 + CSW01_19295 0.79 +1.2 990,823 - CSW01_19295 0.80 +0.1 990,823 - CSW01_19295 0.80 -0.0 990,828 - CSW01_19295 0.80 +1.0 990,861 - CSW01_19295 0.82 +1.0 990,900 + CSW01_19295 0.84 -0.0 990,961 + CSW01_19295 0.88 -0.9 990,976 + CSW01_19295 0.89 +1.6 991,049 + -3.3 991,060 + +0.8 991,152 + -2.0 991,160 - -1.3 991,278 + CSW01_19300 0.12 -1.7 991,286 - CSW01_19300 0.14 +1.7 991,470 + CSW01_19300 0.60 +0.2 991,478 - CSW01_19300 0.62 +1.0 991,583 + -0.5 991,583 + -1.0 991,583 + -2.1 991,731 + CSW01_19305 0.20 -0.5 991,739 - CSW01_19305 0.21 -0.5 991,973 - CSW01_19305 0.46 -0.2 992,022 + CSW01_19305 0.51 -1.9 992,129 + CSW01_19305 0.63 +0.6 992,270 + CSW01_19305 0.78 -0.4 992,382 - CSW01_19305 0.89 -0.6 992,577 - -2.6 992,579 + -3.5 992,586 + +1.0 992,586 + +0.0 992,586 + +0.9 992,586 + -0.4 992,592 - -0.7 992,594 - +0.4 992,594 - +0.8 992,609 - +0.9 992,611 - +0.1 992,682 + +1.1 993,218 + -1.7 993,305 - CSW01_19315 0.12 -0.3 993,307 - CSW01_19315 0.13 +1.5 993,376 + CSW01_19315 0.16 +0.8
Or see this region's nucleotide sequence