Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19280 and CSW01_19285 are separated by 35 nucleotides CSW01_19285 and CSW01_19290 are separated by 0 nucleotides CSW01_19290 and CSW01_19295 are separated by 112 nucleotides
CSW01_19280: CSW01_19280 - amino acid ABC transporter permease, at 986,784 to 987,584
_19280
CSW01_19285: CSW01_19285 - amino acid ABC transporter substrate-binding protein, at 987,620 to 988,456
_19285
CSW01_19290: CSW01_19290 - amino acid ABC transporter permease, at 988,457 to 989,353
_19290
CSW01_19295: CSW01_19295 - phospho-sugar mutase, at 989,466 to 991,169
_19295
Position (kb) 988
989
990 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 987.500 kb on + strand, within CSW01_19280 at 987.517 kb on - strand at 987.517 kb on - strand at 987.538 kb on - strand at 987.549 kb on + strand at 987.558 kb on - strand at 987.644 kb on + strand at 987.735 kb on + strand, within CSW01_19285 at 987.745 kb on + strand, within CSW01_19285 at 987.753 kb on - strand, within CSW01_19285 at 987.795 kb on + strand, within CSW01_19285 at 987.957 kb on + strand, within CSW01_19285 at 988.011 kb on - strand, within CSW01_19285 at 988.245 kb on + strand, within CSW01_19285 at 988.253 kb on - strand, within CSW01_19285 at 988.287 kb on - strand, within CSW01_19285 at 988.376 kb on + strand at 988.549 kb on + strand, within CSW01_19290 at 988.565 kb on + strand, within CSW01_19290 at 988.666 kb on - strand, within CSW01_19290 at 988.705 kb on - strand, within CSW01_19290 at 988.709 kb on + strand, within CSW01_19290 at 988.717 kb on - strand, within CSW01_19290 at 988.748 kb on - strand, within CSW01_19290 at 988.813 kb on - strand, within CSW01_19290 at 988.850 kb on - strand, within CSW01_19290 at 988.895 kb on + strand, within CSW01_19290 at 988.914 kb on + strand, within CSW01_19290 at 988.924 kb on + strand, within CSW01_19290 at 988.981 kb on + strand, within CSW01_19290 at 988.989 kb on - strand, within CSW01_19290 at 989.146 kb on + strand, within CSW01_19290 at 989.148 kb on + strand, within CSW01_19290 at 989.156 kb on - strand, within CSW01_19290 at 989.211 kb on - strand, within CSW01_19290 at 989.297 kb on - strand at 989.297 kb on - strand at 989.306 kb on - strand at 989.307 kb on - strand at 989.681 kb on - strand, within CSW01_19295 at 989.752 kb on + strand, within CSW01_19295 at 989.766 kb on + strand, within CSW01_19295 at 989.776 kb on + strand, within CSW01_19295 at 989.893 kb on + strand, within CSW01_19295 at 989.923 kb on + strand, within CSW01_19295 at 990.028 kb on + strand, within CSW01_19295 at 990.028 kb on + strand, within CSW01_19295 at 990.028 kb on + strand, within CSW01_19295 at 990.036 kb on - strand, within CSW01_19295 at 990.036 kb on - strand, within CSW01_19295 at 990.080 kb on + strand, within CSW01_19295 at 990.117 kb on + strand, within CSW01_19295 at 990.144 kb on + strand, within CSW01_19295 at 990.163 kb on - strand, within CSW01_19295 at 990.225 kb on - strand, within CSW01_19295 at 990.235 kb on - strand, within CSW01_19295 at 990.235 kb on - strand, within CSW01_19295 at 990.244 kb on - strand, within CSW01_19295 at 990.248 kb on + strand, within CSW01_19295 at 990.302 kb on - strand, within CSW01_19295 at 990.344 kb on + strand, within CSW01_19295 at 990.348 kb on + strand, within CSW01_19295 at 990.348 kb on + strand, within CSW01_19295
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 987,500 + CSW01_19280 0.89 +3.0 987,517 - -4.4 987,517 - +2.2 987,538 - -3.7 987,549 + +1.6 987,558 - +0.1 987,644 + -0.5 987,735 + CSW01_19285 0.14 +0.4 987,745 + CSW01_19285 0.15 -1.2 987,753 - CSW01_19285 0.16 +1.8 987,795 + CSW01_19285 0.21 -2.4 987,957 + CSW01_19285 0.40 -1.3 988,011 - CSW01_19285 0.47 -0.2 988,245 + CSW01_19285 0.75 -3.8 988,253 - CSW01_19285 0.76 -2.1 988,287 - CSW01_19285 0.80 -0.0 988,376 + +0.1 988,549 + CSW01_19290 0.10 -2.0 988,565 + CSW01_19290 0.12 -1.5 988,666 - CSW01_19290 0.23 -2.5 988,705 - CSW01_19290 0.28 +2.5 988,709 + CSW01_19290 0.28 -0.6 988,717 - CSW01_19290 0.29 +0.4 988,748 - CSW01_19290 0.32 +3.2 988,813 - CSW01_19290 0.40 -2.0 988,850 - CSW01_19290 0.44 +0.8 988,895 + CSW01_19290 0.49 -1.6 988,914 + CSW01_19290 0.51 -0.7 988,924 + CSW01_19290 0.52 -1.3 988,981 + CSW01_19290 0.58 -2.2 988,989 - CSW01_19290 0.59 -2.6 989,146 + CSW01_19290 0.77 +0.9 989,148 + CSW01_19290 0.77 -0.7 989,156 - CSW01_19290 0.78 +0.7 989,211 - CSW01_19290 0.84 -2.8 989,297 - +1.2 989,297 - -3.2 989,306 - -0.6 989,307 - -1.9 989,681 - CSW01_19295 0.13 -2.6 989,752 + CSW01_19295 0.17 +0.5 989,766 + CSW01_19295 0.18 -0.3 989,776 + CSW01_19295 0.18 -0.6 989,893 + CSW01_19295 0.25 +0.6 989,923 + CSW01_19295 0.27 -0.5 990,028 + CSW01_19295 0.33 -2.4 990,028 + CSW01_19295 0.33 +0.2 990,028 + CSW01_19295 0.33 +1.2 990,036 - CSW01_19295 0.33 +1.8 990,036 - CSW01_19295 0.33 -2.2 990,080 + CSW01_19295 0.36 -1.2 990,117 + CSW01_19295 0.38 +0.5 990,144 + CSW01_19295 0.40 +0.2 990,163 - CSW01_19295 0.41 +1.4 990,225 - CSW01_19295 0.45 +1.8 990,235 - CSW01_19295 0.45 -3.0 990,235 - CSW01_19295 0.45 -2.9 990,244 - CSW01_19295 0.46 -1.5 990,248 + CSW01_19295 0.46 +0.7 990,302 - CSW01_19295 0.49 +1.1 990,344 + CSW01_19295 0.52 -1.1 990,348 + CSW01_19295 0.52 -2.5 990,348 + CSW01_19295 0.52 -2.0
Or see this region's nucleotide sequence