Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19235 and CSW01_19240 are separated by 134 nucleotides CSW01_19240 and CSW01_19245 are separated by 459 nucleotides CSW01_19245 and CSW01_19250 are separated by 114 nucleotides CSW01_19250 and CSW01_19255 are separated by 267 nucleotides
CSW01_19235: CSW01_19235 - glycogen debranching enzyme GlgX, at 975,567 to 977,537
_19235
CSW01_19240: CSW01_19240 - DUF2999 domain-containing protein, at 977,672 to 977,923
_19240
CSW01_19245: CSW01_19245 - methyl-accepting chemotaxis protein, at 978,383 to 980,014
_19245
CSW01_19250: CSW01_19250 - hypothetical protein, at 980,129 to 980,536
_19250
CSW01_19255: CSW01_19255 - carbohydrate ABC transporter substrate-binding protein, at 980,804 to 982,180
_19255
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 977.451 kb on - strand at 977.453 kb on + strand at 977.464 kb on - strand at 977.502 kb on + strand at 977.569 kb on + strand at 977.594 kb on - strand at 977.599 kb on - strand at 977.765 kb on + strand, within CSW01_19240 at 977.829 kb on - strand, within CSW01_19240 at 977.856 kb on - strand, within CSW01_19240 at 977.955 kb on - strand at 978.050 kb on - strand at 978.180 kb on - strand at 978.180 kb on - strand at 978.259 kb on + strand at 978.259 kb on + strand at 978.259 kb on + strand at 978.267 kb on - strand at 978.267 kb on - strand at 978.267 kb on - strand at 978.267 kb on - strand at 978.288 kb on + strand at 978.379 kb on + strand at 978.379 kb on + strand at 978.563 kb on - strand, within CSW01_19245 at 978.571 kb on - strand, within CSW01_19245 at 978.645 kb on - strand, within CSW01_19245 at 978.685 kb on - strand, within CSW01_19245 at 978.685 kb on - strand, within CSW01_19245 at 978.708 kb on - strand, within CSW01_19245 at 978.708 kb on - strand, within CSW01_19245 at 978.834 kb on + strand, within CSW01_19245 at 978.915 kb on + strand, within CSW01_19245 at 979.039 kb on - strand, within CSW01_19245 at 979.072 kb on + strand, within CSW01_19245 at 979.080 kb on - strand, within CSW01_19245 at 979.085 kb on - strand, within CSW01_19245 at 979.096 kb on - strand, within CSW01_19245 at 979.209 kb on + strand, within CSW01_19245 at 979.403 kb on - strand, within CSW01_19245 at 979.463 kb on - strand, within CSW01_19245 at 979.463 kb on - strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.752 kb on + strand, within CSW01_19245 at 979.760 kb on - strand, within CSW01_19245 at 979.760 kb on - strand, within CSW01_19245 at 979.760 kb on - strand, within CSW01_19245 at 979.877 kb on - strand at 979.930 kb on - strand at 979.933 kb on + strand at 979.941 kb on - strand at 979.943 kb on + strand at 979.943 kb on + strand at 979.943 kb on + strand at 979.951 kb on - strand at 979.953 kb on + strand at 980.002 kb on - strand at 980.237 kb on - strand, within CSW01_19250 at 980.369 kb on + strand, within CSW01_19250 at 980.369 kb on + strand, within CSW01_19250 at 980.410 kb on + strand, within CSW01_19250 at 980.554 kb on + strand at 980.564 kb on + strand at 980.642 kb on + strand at 980.657 kb on - strand at 980.708 kb on - strand at 980.708 kb on - strand at 980.738 kb on + strand at 980.739 kb on - strand at 980.772 kb on + strand at 980.772 kb on + strand at 980.780 kb on - strand at 980.815 kb on + strand at 980.825 kb on - strand at 980.827 kb on + strand at 980.904 kb on + strand at 980.917 kb on + strand at 980.927 kb on - strand at 980.935 kb on - strand at 980.979 kb on - strand, within CSW01_19255
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 977,451 - +1.1 977,453 + -0.0 977,464 - +0.4 977,502 + -0.7 977,569 + -0.1 977,594 - +0.5 977,599 - -2.7 977,765 + CSW01_19240 0.37 -0.1 977,829 - CSW01_19240 0.62 -0.2 977,856 - CSW01_19240 0.73 -3.3 977,955 - -3.3 978,050 - -0.3 978,180 - -1.7 978,180 - -3.9 978,259 + +0.3 978,259 + -1.4 978,259 + -0.8 978,267 - +0.5 978,267 - -0.0 978,267 - -2.6 978,267 - +1.0 978,288 + -0.1 978,379 + -1.5 978,379 + -0.3 978,563 - CSW01_19245 0.11 -1.6 978,571 - CSW01_19245 0.12 -3.3 978,645 - CSW01_19245 0.16 -3.6 978,685 - CSW01_19245 0.19 +0.5 978,685 - CSW01_19245 0.19 +0.6 978,708 - CSW01_19245 0.20 +1.5 978,708 - CSW01_19245 0.20 -0.6 978,834 + CSW01_19245 0.28 +1.6 978,915 + CSW01_19245 0.33 +0.6 979,039 - CSW01_19245 0.40 -2.0 979,072 + CSW01_19245 0.42 +1.2 979,080 - CSW01_19245 0.43 +0.3 979,085 - CSW01_19245 0.43 -0.1 979,096 - CSW01_19245 0.44 -1.7 979,209 + CSW01_19245 0.51 +1.1 979,403 - CSW01_19245 0.62 -2.0 979,463 - CSW01_19245 0.66 +1.2 979,463 - CSW01_19245 0.66 +2.2 979,752 + CSW01_19245 0.84 +1.0 979,752 + CSW01_19245 0.84 -0.9 979,752 + CSW01_19245 0.84 -0.2 979,752 + CSW01_19245 0.84 -0.3 979,752 + CSW01_19245 0.84 +0.5 979,760 - CSW01_19245 0.84 -2.9 979,760 - CSW01_19245 0.84 -1.1 979,760 - CSW01_19245 0.84 -3.5 979,877 - +0.8 979,930 - +0.0 979,933 + -0.3 979,941 - -3.0 979,943 + -1.7 979,943 + -3.0 979,943 + -2.5 979,951 - -1.2 979,953 + -4.1 980,002 - -1.6 980,237 - CSW01_19250 0.26 +2.7 980,369 + CSW01_19250 0.59 -1.9 980,369 + CSW01_19250 0.59 -0.9 980,410 + CSW01_19250 0.69 -0.8 980,554 + -2.0 980,564 + -3.1 980,642 + +0.2 980,657 - +1.1 980,708 - -3.0 980,708 - -0.6 980,738 + -0.4 980,739 - +0.3 980,772 + +2.1 980,772 + +1.0 980,780 - +2.5 980,815 + -0.1 980,825 - -0.9 980,827 + -1.5 980,904 + +1.1 980,917 + -0.3 980,927 - +1.1 980,935 - +0.6 980,979 - CSW01_19255 0.13 -2.2
Or see this region's nucleotide sequence