Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19070 and CSW01_19075 are separated by 120 nucleotides CSW01_19075 and CSW01_19080 are separated by 9 nucleotides CSW01_19080 and CSW01_19085 are separated by 120 nucleotides
CSW01_19070: CSW01_19070 - LysR family transcriptional regulator, at 943,571 to 944,497
_19070
CSW01_19075: CSW01_19075 - glutaredoxin 2, at 944,618 to 945,274
_19075
CSW01_19080: CSW01_19080 - alkene reductase, at 945,284 to 946,387
_19080
CSW01_19085: CSW01_19085 - amidinotransferase, at 946,508 to 947,488
_19085
Position (kb) 945
946
947 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 944.319 kb on - strand, within CSW01_19070 at 944.397 kb on - strand, within CSW01_19070 at 944.446 kb on - strand at 944.577 kb on + strand at 944.587 kb on + strand at 944.660 kb on - strand at 944.688 kb on - strand, within CSW01_19075 at 944.706 kb on + strand, within CSW01_19075 at 944.714 kb on - strand, within CSW01_19075 at 944.846 kb on - strand, within CSW01_19075 at 944.883 kb on - strand, within CSW01_19075 at 944.936 kb on - strand, within CSW01_19075 at 944.950 kb on + strand, within CSW01_19075 at 945.005 kb on - strand, within CSW01_19075 at 945.005 kb on - strand, within CSW01_19075 at 945.053 kb on + strand, within CSW01_19075 at 945.061 kb on - strand, within CSW01_19075 at 945.063 kb on + strand, within CSW01_19075 at 945.063 kb on + strand, within CSW01_19075 at 945.096 kb on + strand, within CSW01_19075 at 945.214 kb on - strand at 945.326 kb on + strand at 945.326 kb on + strand at 945.334 kb on - strand at 945.334 kb on - strand at 945.347 kb on + strand at 945.355 kb on - strand at 945.463 kb on - strand, within CSW01_19080 at 945.478 kb on + strand, within CSW01_19080 at 945.642 kb on + strand, within CSW01_19080 at 945.657 kb on - strand, within CSW01_19080 at 945.719 kb on + strand, within CSW01_19080 at 945.722 kb on - strand, within CSW01_19080 at 945.722 kb on - strand, within CSW01_19080 at 945.722 kb on - strand, within CSW01_19080 at 945.755 kb on + strand, within CSW01_19080 at 945.808 kb on - strand, within CSW01_19080 at 945.827 kb on + strand, within CSW01_19080 at 945.890 kb on + strand, within CSW01_19080 at 946.012 kb on - strand, within CSW01_19080 at 946.012 kb on - strand, within CSW01_19080 at 946.023 kb on - strand, within CSW01_19080 at 946.044 kb on + strand, within CSW01_19080 at 946.044 kb on + strand, within CSW01_19080 at 946.084 kb on - strand, within CSW01_19080 at 946.109 kb on + strand, within CSW01_19080 at 946.158 kb on - strand, within CSW01_19080 at 946.208 kb on - strand, within CSW01_19080 at 946.348 kb on - strand at 946.348 kb on - strand at 946.348 kb on - strand at 946.456 kb on + strand at 946.468 kb on + strand at 946.555 kb on - strand at 946.607 kb on - strand, within CSW01_19085 at 946.722 kb on + strand, within CSW01_19085 at 946.948 kb on - strand, within CSW01_19085 at 946.948 kb on - strand, within CSW01_19085 at 946.956 kb on + strand, within CSW01_19085 at 946.974 kb on - strand, within CSW01_19085 at 947.022 kb on - strand, within CSW01_19085 at 947.064 kb on - strand, within CSW01_19085 at 947.184 kb on + strand, within CSW01_19085 at 947.184 kb on + strand, within CSW01_19085 at 947.233 kb on - strand, within CSW01_19085 at 947.238 kb on - strand, within CSW01_19085 at 947.371 kb on - strand, within CSW01_19085 at 947.380 kb on + strand, within CSW01_19085
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 944,319 - CSW01_19070 0.81 -0.0 944,397 - CSW01_19070 0.89 +0.6 944,446 - -2.0 944,577 + -0.1 944,587 + +0.5 944,660 - -0.7 944,688 - CSW01_19075 0.11 -2.1 944,706 + CSW01_19075 0.13 -1.5 944,714 - CSW01_19075 0.15 -0.1 944,846 - CSW01_19075 0.35 -0.1 944,883 - CSW01_19075 0.40 +0.4 944,936 - CSW01_19075 0.48 -0.8 944,950 + CSW01_19075 0.51 -0.3 945,005 - CSW01_19075 0.59 +2.6 945,005 - CSW01_19075 0.59 -1.6 945,053 + CSW01_19075 0.66 +0.8 945,061 - CSW01_19075 0.67 -1.8 945,063 + CSW01_19075 0.68 -2.6 945,063 + CSW01_19075 0.68 -0.4 945,096 + CSW01_19075 0.73 -2.0 945,214 - +1.8 945,326 + +1.2 945,326 + -0.1 945,334 - +0.7 945,334 - -0.2 945,347 + -2.0 945,355 - +0.5 945,463 - CSW01_19080 0.16 -2.6 945,478 + CSW01_19080 0.18 -1.6 945,642 + CSW01_19080 0.32 +0.8 945,657 - CSW01_19080 0.34 -0.3 945,719 + CSW01_19080 0.39 -2.7 945,722 - CSW01_19080 0.40 -1.9 945,722 - CSW01_19080 0.40 -2.1 945,722 - CSW01_19080 0.40 -2.1 945,755 + CSW01_19080 0.43 +0.8 945,808 - CSW01_19080 0.47 +0.3 945,827 + CSW01_19080 0.49 -0.9 945,890 + CSW01_19080 0.55 -2.9 946,012 - CSW01_19080 0.66 -0.7 946,012 - CSW01_19080 0.66 -1.2 946,023 - CSW01_19080 0.67 -3.1 946,044 + CSW01_19080 0.69 +0.8 946,044 + CSW01_19080 0.69 -2.7 946,084 - CSW01_19080 0.72 -2.2 946,109 + CSW01_19080 0.75 -0.4 946,158 - CSW01_19080 0.79 -4.2 946,208 - CSW01_19080 0.84 -0.2 946,348 - -0.3 946,348 - -2.7 946,348 - -2.3 946,456 + +0.5 946,468 + +2.0 946,555 - -2.1 946,607 - CSW01_19085 0.10 -2.7 946,722 + CSW01_19085 0.22 +0.8 946,948 - CSW01_19085 0.45 -2.7 946,948 - CSW01_19085 0.45 -0.5 946,956 + CSW01_19085 0.46 +1.2 946,974 - CSW01_19085 0.48 -2.5 947,022 - CSW01_19085 0.52 -1.7 947,064 - CSW01_19085 0.57 +0.2 947,184 + CSW01_19085 0.69 -0.0 947,184 + CSW01_19085 0.69 +0.3 947,233 - CSW01_19085 0.74 -0.6 947,238 - CSW01_19085 0.74 +0.6 947,371 - CSW01_19085 0.88 +0.7 947,380 + CSW01_19085 0.89 -1.2
Or see this region's nucleotide sequence