Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19060

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19055 and CSW01_19060 are separated by 357 nucleotidesCSW01_19060 and CSW01_19065 are separated by 78 nucleotides CSW01_19055: CSW01_19055 - chemotaxis protein, at 938,866 to 940,422 _19055 CSW01_19060: CSW01_19060 - MATE family efflux transporter, at 940,780 to 942,114 _19060 CSW01_19065: CSW01_19065 - ATP-dependent helicase, at 942,193 to 943,479 _19065 Position (kb) 940 941 942 943Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 939.808 kb on - strand, within CSW01_19055at 939.890 kb on - strand, within CSW01_19055at 939.930 kb on + strand, within CSW01_19055at 940.007 kb on + strand, within CSW01_19055at 940.007 kb on + strand, within CSW01_19055at 940.042 kb on + strand, within CSW01_19055at 940.042 kb on + strand, within CSW01_19055at 940.047 kb on + strand, within CSW01_19055at 940.047 kb on + strand, within CSW01_19055at 940.047 kb on + strand, within CSW01_19055at 940.117 kb on + strand, within CSW01_19055at 940.136 kb on + strand, within CSW01_19055at 940.143 kb on + strand, within CSW01_19055at 940.166 kb on + strand, within CSW01_19055at 940.279 kb on + strandat 940.325 kb on + strandat 940.333 kb on - strandat 940.410 kb on - strandat 940.424 kb on - strandat 940.455 kb on + strandat 940.505 kb on - strandat 940.520 kb on - strandat 940.591 kb on + strandat 940.640 kb on - strandat 940.646 kb on - strandat 940.690 kb on - strandat 940.737 kb on - strandat 940.766 kb on - strandat 940.835 kb on + strandat 940.862 kb on - strandat 940.868 kb on + strandat 940.869 kb on - strandat 940.910 kb on - strandat 940.910 kb on - strandat 940.924 kb on + strand, within CSW01_19060at 940.930 kb on + strand, within CSW01_19060at 940.984 kb on - strand, within CSW01_19060at 941.052 kb on - strand, within CSW01_19060at 941.122 kb on + strand, within CSW01_19060at 941.142 kb on - strand, within CSW01_19060at 941.213 kb on - strand, within CSW01_19060at 941.226 kb on + strand, within CSW01_19060at 941.250 kb on + strand, within CSW01_19060at 941.289 kb on - strand, within CSW01_19060at 941.397 kb on + strand, within CSW01_19060at 941.402 kb on + strand, within CSW01_19060at 941.402 kb on + strand, within CSW01_19060at 941.416 kb on - strand, within CSW01_19060at 941.448 kb on + strand, within CSW01_19060at 941.456 kb on - strand, within CSW01_19060at 941.465 kb on + strand, within CSW01_19060at 941.465 kb on + strand, within CSW01_19060at 941.473 kb on - strand, within CSW01_19060at 941.500 kb on + strand, within CSW01_19060at 941.500 kb on + strand, within CSW01_19060at 941.500 kb on + strand, within CSW01_19060at 941.518 kb on + strand, within CSW01_19060at 941.631 kb on + strand, within CSW01_19060at 941.652 kb on + strand, within CSW01_19060at 941.660 kb on - strand, within CSW01_19060at 941.662 kb on + strand, within CSW01_19060at 941.791 kb on - strand, within CSW01_19060at 941.905 kb on + strand, within CSW01_19060at 941.921 kb on - strand, within CSW01_19060at 941.923 kb on + strand, within CSW01_19060at 942.040 kb on - strandat 942.047 kb on + strandat 942.052 kb on + strandat 942.092 kb on - strandat 942.114 kb on + strandat 942.122 kb on - strandat 942.217 kb on - strandat 942.278 kb on - strandat 942.290 kb on + strandat 942.348 kb on + strand, within CSW01_19065at 942.348 kb on + strand, within CSW01_19065at 942.348 kb on + strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.356 kb on - strand, within CSW01_19065at 942.368 kb on - strand, within CSW01_19065at 942.405 kb on + strand, within CSW01_19065at 942.428 kb on - strand, within CSW01_19065at 942.438 kb on + strand, within CSW01_19065at 942.507 kb on - strand, within CSW01_19065at 942.547 kb on + strand, within CSW01_19065at 942.555 kb on - strand, within CSW01_19065at 942.613 kb on + strand, within CSW01_19065at 942.621 kb on - strand, within CSW01_19065at 942.841 kb on - strand, within CSW01_19065at 942.886 kb on + strand, within CSW01_19065at 942.992 kb on - strand, within CSW01_19065at 942.997 kb on + strand, within CSW01_19065at 943.005 kb on - strand, within CSW01_19065at 943.091 kb on + strand, within CSW01_19065at 943.099 kb on - strand, within CSW01_19065

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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939,808 - CSW01_19055 0.61 +0.3
939,890 - CSW01_19055 0.66 -1.2
939,930 + CSW01_19055 0.68 -1.5
940,007 + CSW01_19055 0.73 -1.2
940,007 + CSW01_19055 0.73 +0.4
940,042 + CSW01_19055 0.76 +1.6
940,042 + CSW01_19055 0.76 +0.6
940,047 + CSW01_19055 0.76 +1.4
940,047 + CSW01_19055 0.76 +0.8
940,047 + CSW01_19055 0.76 -0.3
940,117 + CSW01_19055 0.80 +1.0
940,136 + CSW01_19055 0.82 +1.3
940,143 + CSW01_19055 0.82 -0.8
940,166 + CSW01_19055 0.83 +0.4
940,279 + -2.1
940,325 + -1.2
940,333 - -1.5
940,410 - -0.3
940,424 - +0.0
940,455 + -0.0
940,505 - +2.3
940,520 - +0.1
940,591 + -0.2
940,640 - -3.7
940,646 - -0.5
940,690 - -0.7
940,737 - -1.6
940,766 - +0.2
940,835 + +2.6
940,862 - -0.1
940,868 + -1.5
940,869 - +0.5
940,910 - +0.8
940,910 - -1.4
940,924 + CSW01_19060 0.11 -1.1
940,930 + CSW01_19060 0.11 -1.7
940,984 - CSW01_19060 0.15 +2.0
941,052 - CSW01_19060 0.20 -1.9
941,122 + CSW01_19060 0.26 +0.9
941,142 - CSW01_19060 0.27 +0.5
941,213 - CSW01_19060 0.32 +1.1
941,226 + CSW01_19060 0.33 +0.5
941,250 + CSW01_19060 0.35 -0.3
941,289 - CSW01_19060 0.38 +0.5
941,397 + CSW01_19060 0.46 +1.2
941,402 + CSW01_19060 0.47 -2.3
941,402 + CSW01_19060 0.47 -3.1
941,416 - CSW01_19060 0.48 -1.6
941,448 + CSW01_19060 0.50 -0.4
941,456 - CSW01_19060 0.51 +1.0
941,465 + CSW01_19060 0.51 -1.2
941,465 + CSW01_19060 0.51 -0.6
941,473 - CSW01_19060 0.52 +1.7
941,500 + CSW01_19060 0.54 +1.0
941,500 + CSW01_19060 0.54 -1.2
941,500 + CSW01_19060 0.54 -2.0
941,518 + CSW01_19060 0.55 -1.3
941,631 + CSW01_19060 0.64 -0.1
941,652 + CSW01_19060 0.65 -0.6
941,660 - CSW01_19060 0.66 +0.1
941,662 + CSW01_19060 0.66 -1.7
941,791 - CSW01_19060 0.76 +0.3
941,905 + CSW01_19060 0.84 -1.6
941,921 - CSW01_19060 0.85 +1.1
941,923 + CSW01_19060 0.86 +0.7
942,040 - +1.3
942,047 + +0.5
942,052 + +1.5
942,092 - +1.2
942,114 + -2.0
942,122 - +1.5
942,217 - +0.6
942,278 - +1.4
942,290 + -3.1
942,348 + CSW01_19065 0.12 -1.5
942,348 + CSW01_19065 0.12 -2.9
942,348 + CSW01_19065 0.12 +2.3
942,356 - CSW01_19065 0.13 -0.5
942,356 - CSW01_19065 0.13 -0.4
942,356 - CSW01_19065 0.13 -0.6
942,356 - CSW01_19065 0.13 -1.9
942,356 - CSW01_19065 0.13 +1.4
942,368 - CSW01_19065 0.14 -0.3
942,405 + CSW01_19065 0.16 -0.5
942,428 - CSW01_19065 0.18 +1.5
942,438 + CSW01_19065 0.19 -1.0
942,507 - CSW01_19065 0.24 -0.9
942,547 + CSW01_19065 0.28 -0.8
942,555 - CSW01_19065 0.28 -1.7
942,613 + CSW01_19065 0.33 +0.0
942,621 - CSW01_19065 0.33 +0.1
942,841 - CSW01_19065 0.50 +0.9
942,886 + CSW01_19065 0.54 -2.0
942,992 - CSW01_19065 0.62 -2.4
942,997 + CSW01_19065 0.62 +0.5
943,005 - CSW01_19065 0.63 -1.8
943,091 + CSW01_19065 0.70 +0.2
943,099 - CSW01_19065 0.70 -2.8

Or see this region's nucleotide sequence