Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19030

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19025 and CSW01_19030 are separated by 151 nucleotidesCSW01_19030 and CSW01_19035 are separated by 122 nucleotides CSW01_19025: CSW01_19025 - LysR family transcriptional regulator, at 928,185 to 929,084 _19025 CSW01_19030: CSW01_19030 - L-lactate permease, at 929,236 to 930,984 _19030 CSW01_19035: CSW01_19035 - alpha-hydroxy-acid oxidizing enzyme, at 931,107 to 932,243 _19035 Position (kb) 929 930 931Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 928.352 kb on + strand, within CSW01_19025at 928.367 kb on + strand, within CSW01_19025at 928.376 kb on - strand, within CSW01_19025at 928.399 kb on + strand, within CSW01_19025at 928.399 kb on + strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.417 kb on - strand, within CSW01_19025at 928.417 kb on - strand, within CSW01_19025at 928.426 kb on + strand, within CSW01_19025at 928.445 kb on + strand, within CSW01_19025at 928.688 kb on + strand, within CSW01_19025at 928.740 kb on - strand, within CSW01_19025at 928.801 kb on + strand, within CSW01_19025at 929.226 kb on + strandat 929.226 kb on + strandat 929.234 kb on - strandat 929.267 kb on + strandat 929.267 kb on + strandat 929.275 kb on - strandat 929.302 kb on - strandat 929.319 kb on - strandat 929.344 kb on + strandat 929.352 kb on - strandat 929.407 kb on - strandat 929.407 kb on - strandat 929.541 kb on - strand, within CSW01_19030at 929.546 kb on - strand, within CSW01_19030at 929.641 kb on - strand, within CSW01_19030at 929.722 kb on + strand, within CSW01_19030at 929.730 kb on - strand, within CSW01_19030at 929.803 kb on + strand, within CSW01_19030at 929.803 kb on + strand, within CSW01_19030at 929.811 kb on - strand, within CSW01_19030at 929.811 kb on - strand, within CSW01_19030at 929.811 kb on - strand, within CSW01_19030at 929.838 kb on + strand, within CSW01_19030at 929.895 kb on + strand, within CSW01_19030at 929.925 kb on - strand, within CSW01_19030at 929.983 kb on + strand, within CSW01_19030at 930.031 kb on - strand, within CSW01_19030at 930.049 kb on + strand, within CSW01_19030at 930.053 kb on - strand, within CSW01_19030at 930.062 kb on + strand, within CSW01_19030at 930.138 kb on - strand, within CSW01_19030at 930.191 kb on + strand, within CSW01_19030at 930.191 kb on + strand, within CSW01_19030at 930.199 kb on - strand, within CSW01_19030at 930.222 kb on + strand, within CSW01_19030at 930.242 kb on + strand, within CSW01_19030at 930.255 kb on - strand, within CSW01_19030at 930.330 kb on + strand, within CSW01_19030at 930.383 kb on + strand, within CSW01_19030at 930.447 kb on - strand, within CSW01_19030at 930.458 kb on + strand, within CSW01_19030at 930.458 kb on + strand, within CSW01_19030at 930.458 kb on + strand, within CSW01_19030at 930.466 kb on - strand, within CSW01_19030at 930.480 kb on - strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.588 kb on - strand, within CSW01_19030at 930.630 kb on - strand, within CSW01_19030at 930.689 kb on + strand, within CSW01_19030at 930.700 kb on + strand, within CSW01_19030at 930.748 kb on - strand, within CSW01_19030at 930.827 kb on - strandat 930.869 kb on + strandat 930.869 kb on + strandat 930.869 kb on + strandat 930.874 kb on + strandat 930.898 kb on + strandat 930.911 kb on - strandat 930.911 kb on - strandat 930.916 kb on - strandat 931.092 kb on + strandat 931.095 kb on - strandat 931.167 kb on + strandat 931.210 kb on - strandat 931.237 kb on + strand, within CSW01_19035at 931.237 kb on + strand, within CSW01_19035at 931.245 kb on - strand, within CSW01_19035at 931.245 kb on - strand, within CSW01_19035at 931.245 kb on - strand, within CSW01_19035at 931.270 kb on + strand, within CSW01_19035at 931.278 kb on - strand, within CSW01_19035at 931.411 kb on + strand, within CSW01_19035at 931.470 kb on + strand, within CSW01_19035at 931.617 kb on + strand, within CSW01_19035at 931.630 kb on - strand, within CSW01_19035at 931.638 kb on + strand, within CSW01_19035at 931.646 kb on - strand, within CSW01_19035at 931.646 kb on - strand, within CSW01_19035at 931.735 kb on + strand, within CSW01_19035at 931.787 kb on + strand, within CSW01_19035at 931.787 kb on + strand, within CSW01_19035at 931.843 kb on + strand, within CSW01_19035at 931.908 kb on + strand, within CSW01_19035at 931.912 kb on + strand, within CSW01_19035at 931.912 kb on + strand, within CSW01_19035at 931.955 kb on + strand, within CSW01_19035at 931.955 kb on + strand, within CSW01_19035

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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928,352 + CSW01_19025 0.19 -1.2
928,367 + CSW01_19025 0.20 -2.5
928,376 - CSW01_19025 0.21 +0.9
928,399 + CSW01_19025 0.24 -0.4
928,399 + CSW01_19025 0.24 -2.7
928,407 - CSW01_19025 0.25 -0.0
928,407 - CSW01_19025 0.25 +0.5
928,407 - CSW01_19025 0.25 -0.2
928,407 - CSW01_19025 0.25 -1.2
928,417 - CSW01_19025 0.26 -1.2
928,417 - CSW01_19025 0.26 -0.2
928,426 + CSW01_19025 0.27 -0.3
928,445 + CSW01_19025 0.29 -0.4
928,688 + CSW01_19025 0.56 +1.0
928,740 - CSW01_19025 0.62 -0.6
928,801 + CSW01_19025 0.68 -0.0
929,226 + -2.3
929,226 + -1.0
929,234 - +0.9
929,267 + -0.3
929,267 + -4.4
929,275 - +1.6
929,302 - +0.8
929,319 - +0.1
929,344 + -1.3
929,352 - +1.6
929,407 - -1.2
929,407 - +0.7
929,541 - CSW01_19030 0.17 -1.0
929,546 - CSW01_19030 0.18 -0.6
929,641 - CSW01_19030 0.23 -0.2
929,722 + CSW01_19030 0.28 +0.0
929,730 - CSW01_19030 0.28 -0.2
929,803 + CSW01_19030 0.32 -1.0
929,803 + CSW01_19030 0.32 -2.3
929,811 - CSW01_19030 0.33 +1.3
929,811 - CSW01_19030 0.33 -1.5
929,811 - CSW01_19030 0.33 -2.6
929,838 + CSW01_19030 0.34 -0.1
929,895 + CSW01_19030 0.38 +0.1
929,925 - CSW01_19030 0.39 -2.0
929,983 + CSW01_19030 0.43 -2.9
930,031 - CSW01_19030 0.45 -1.6
930,049 + CSW01_19030 0.46 +0.0
930,053 - CSW01_19030 0.47 -0.0
930,062 + CSW01_19030 0.47 +1.1
930,138 - CSW01_19030 0.52 -1.7
930,191 + CSW01_19030 0.55 -1.7
930,191 + CSW01_19030 0.55 -2.2
930,199 - CSW01_19030 0.55 +0.6
930,222 + CSW01_19030 0.56 +0.8
930,242 + CSW01_19030 0.58 +0.9
930,255 - CSW01_19030 0.58 -1.6
930,330 + CSW01_19030 0.63 +0.6
930,383 + CSW01_19030 0.66 +0.4
930,447 - CSW01_19030 0.69 +1.3
930,458 + CSW01_19030 0.70 +1.9
930,458 + CSW01_19030 0.70 -3.0
930,458 + CSW01_19030 0.70 -3.4
930,466 - CSW01_19030 0.70 -0.6
930,480 - CSW01_19030 0.71 -1.6
930,580 + CSW01_19030 0.77 +0.9
930,580 + CSW01_19030 0.77 +0.3
930,580 + CSW01_19030 0.77 -3.4
930,580 + CSW01_19030 0.77 -2.9
930,580 + CSW01_19030 0.77 -0.2
930,588 - CSW01_19030 0.77 +0.0
930,630 - CSW01_19030 0.80 +1.3
930,689 + CSW01_19030 0.83 +1.4
930,700 + CSW01_19030 0.84 -0.4
930,748 - CSW01_19030 0.86 -2.5
930,827 - -1.2
930,869 + +0.5
930,869 + +0.7
930,869 + +0.5
930,874 + -3.9
930,898 + +1.8
930,911 - -0.0
930,911 - -1.2
930,916 - +0.2
931,092 + -4.3
931,095 - -3.2
931,167 + -2.0
931,210 - -2.1
931,237 + CSW01_19035 0.11 +1.5
931,237 + CSW01_19035 0.11 -1.3
931,245 - CSW01_19035 0.12 -3.3
931,245 - CSW01_19035 0.12 -3.2
931,245 - CSW01_19035 0.12 -3.2
931,270 + CSW01_19035 0.14 +0.7
931,278 - CSW01_19035 0.15 +0.4
931,411 + CSW01_19035 0.27 -2.5
931,470 + CSW01_19035 0.32 -2.2
931,617 + CSW01_19035 0.45 -2.2
931,630 - CSW01_19035 0.46 +1.2
931,638 + CSW01_19035 0.47 -1.4
931,646 - CSW01_19035 0.47 -1.9
931,646 - CSW01_19035 0.47 -3.7
931,735 + CSW01_19035 0.55 -3.0
931,787 + CSW01_19035 0.60 +0.8
931,787 + CSW01_19035 0.60 -0.1
931,843 + CSW01_19035 0.65 +1.2
931,908 + CSW01_19035 0.70 +0.3
931,912 + CSW01_19035 0.71 +0.2
931,912 + CSW01_19035 0.71 -1.4
931,955 + CSW01_19035 0.75 +0.1
931,955 + CSW01_19035 0.75 -2.1

Or see this region's nucleotide sequence