Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19020

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19010 and CSW01_19015 are separated by 19 nucleotidesCSW01_19015 and CSW01_19020 are separated by 130 nucleotidesCSW01_19020 and CSW01_19025 are separated by 153 nucleotides CSW01_19010: CSW01_19010 - methyl-accepting chemotaxis protein, at 925,609 to 926,493 _19010 CSW01_19015: CSW01_19015 - chemotaxis protein, at 926,513 to 927,157 _19015 CSW01_19020: CSW01_19020 - ABC transporter, at 927,288 to 928,031 _19020 CSW01_19025: CSW01_19025 - LysR family transcriptional regulator, at 928,185 to 929,084 _19025 Position (kb) 927 928 929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 926.308 kb on + strand, within CSW01_19010at 926.313 kb on + strand, within CSW01_19010at 926.316 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.395 kb on + strand, within CSW01_19010at 926.426 kb on - strandat 926.437 kb on - strandat 926.437 kb on - strandat 926.460 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.473 kb on - strandat 926.473 kb on - strandat 926.475 kb on + strandat 926.483 kb on - strandat 926.488 kb on + strandat 926.541 kb on - strandat 926.562 kb on - strandat 926.592 kb on + strand, within CSW01_19015at 926.634 kb on - strand, within CSW01_19015at 926.659 kb on - strand, within CSW01_19015at 926.768 kb on + strand, within CSW01_19015at 926.768 kb on + strand, within CSW01_19015at 926.864 kb on - strand, within CSW01_19015at 926.935 kb on + strand, within CSW01_19015at 926.977 kb on - strand, within CSW01_19015at 927.018 kb on - strand, within CSW01_19015at 927.026 kb on - strand, within CSW01_19015at 927.026 kb on - strand, within CSW01_19015at 927.036 kb on - strand, within CSW01_19015at 927.147 kb on - strandat 927.147 kb on - strandat 927.173 kb on - strandat 927.219 kb on - strandat 927.223 kb on + strandat 927.412 kb on + strand, within CSW01_19020at 927.530 kb on - strand, within CSW01_19020at 927.621 kb on - strand, within CSW01_19020at 927.635 kb on + strand, within CSW01_19020at 927.635 kb on + strand, within CSW01_19020at 927.643 kb on - strand, within CSW01_19020at 927.789 kb on + strand, within CSW01_19020at 927.814 kb on + strand, within CSW01_19020at 927.814 kb on + strand, within CSW01_19020at 927.822 kb on - strand, within CSW01_19020at 927.834 kb on - strand, within CSW01_19020at 927.846 kb on + strand, within CSW01_19020at 927.871 kb on + strand, within CSW01_19020at 927.909 kb on + strand, within CSW01_19020at 927.909 kb on + strand, within CSW01_19020at 927.914 kb on + strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.922 kb on - strand, within CSW01_19020at 927.922 kb on - strand, within CSW01_19020at 927.955 kb on + strand, within CSW01_19020at 927.955 kb on - strand, within CSW01_19020at 927.963 kb on - strandat 927.963 kb on - strandat 927.963 kb on - strandat 928.017 kb on - strandat 928.077 kb on - strandat 928.352 kb on + strand, within CSW01_19025at 928.367 kb on + strand, within CSW01_19025at 928.376 kb on - strand, within CSW01_19025at 928.399 kb on + strand, within CSW01_19025at 928.399 kb on + strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.407 kb on - strand, within CSW01_19025at 928.417 kb on - strand, within CSW01_19025at 928.417 kb on - strand, within CSW01_19025at 928.426 kb on + strand, within CSW01_19025at 928.445 kb on + strand, within CSW01_19025at 928.688 kb on + strand, within CSW01_19025at 928.740 kb on - strand, within CSW01_19025at 928.801 kb on + strand, within CSW01_19025

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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926,308 + CSW01_19010 0.79 +1.6
926,313 + CSW01_19010 0.80 +0.0
926,316 - CSW01_19010 0.80 +1.0
926,321 - CSW01_19010 0.80 +0.3
926,321 - CSW01_19010 0.80 -0.4
926,395 + CSW01_19010 0.89 -1.3
926,426 - +0.8
926,437 - +0.5
926,437 - -1.6
926,460 + +0.2
926,465 + -2.6
926,465 + +0.7
926,465 + -0.1
926,465 + -2.4
926,473 - +0.8
926,473 - +0.0
926,475 + +1.8
926,483 - -1.5
926,488 + -2.0
926,541 - +2.2
926,562 - +0.2
926,592 + CSW01_19015 0.12 -1.5
926,634 - CSW01_19015 0.19 -1.0
926,659 - CSW01_19015 0.23 -1.5
926,768 + CSW01_19015 0.40 +0.8
926,768 + CSW01_19015 0.40 +0.9
926,864 - CSW01_19015 0.54 -1.7
926,935 + CSW01_19015 0.65 -0.3
926,977 - CSW01_19015 0.72 +0.0
927,018 - CSW01_19015 0.78 -0.9
927,026 - CSW01_19015 0.80 -1.7
927,026 - CSW01_19015 0.80 -0.3
927,036 - CSW01_19015 0.81 +0.0
927,147 - +1.3
927,147 - -0.1
927,173 - -1.1
927,219 - +0.1
927,223 + +0.2
927,412 + CSW01_19020 0.17 -1.2
927,530 - CSW01_19020 0.33 -2.6
927,621 - CSW01_19020 0.45 +1.1
927,635 + CSW01_19020 0.47 -0.8
927,635 + CSW01_19020 0.47 +0.6
927,643 - CSW01_19020 0.48 -3.1
927,789 + CSW01_19020 0.67 -2.3
927,814 + CSW01_19020 0.71 +0.2
927,814 + CSW01_19020 0.71 +1.2
927,822 - CSW01_19020 0.72 -2.0
927,834 - CSW01_19020 0.73 -1.6
927,846 + CSW01_19020 0.75 -0.8
927,871 + CSW01_19020 0.78 +2.2
927,909 + CSW01_19020 0.83 +1.1
927,909 + CSW01_19020 0.83 -1.5
927,914 + CSW01_19020 0.84 -0.7
927,917 - CSW01_19020 0.85 -3.7
927,917 - CSW01_19020 0.85 -0.7
927,917 - CSW01_19020 0.85 -1.2
927,917 - CSW01_19020 0.85 -0.7
927,917 - CSW01_19020 0.85 +3.0
927,917 - CSW01_19020 0.85 -2.8
927,922 - CSW01_19020 0.85 -0.8
927,922 - CSW01_19020 0.85 -1.1
927,955 + CSW01_19020 0.90 +0.5
927,955 - CSW01_19020 0.90 -2.8
927,963 - -2.6
927,963 - -3.6
927,963 - +0.7
928,017 - -1.2
928,077 - -0.3
928,352 + CSW01_19025 0.19 -1.2
928,367 + CSW01_19025 0.20 -2.5
928,376 - CSW01_19025 0.21 +0.9
928,399 + CSW01_19025 0.24 -0.4
928,399 + CSW01_19025 0.24 -2.7
928,407 - CSW01_19025 0.25 -0.0
928,407 - CSW01_19025 0.25 +0.5
928,407 - CSW01_19025 0.25 -0.2
928,407 - CSW01_19025 0.25 -1.2
928,417 - CSW01_19025 0.26 -1.2
928,417 - CSW01_19025 0.26 -0.2
928,426 + CSW01_19025 0.27 -0.3
928,445 + CSW01_19025 0.29 -0.4
928,688 + CSW01_19025 0.56 +1.0
928,740 - CSW01_19025 0.62 -0.6
928,801 + CSW01_19025 0.68 -0.0

Or see this region's nucleotide sequence