Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18860 and CSW01_18865 are separated by 222 nucleotides CSW01_18865 and CSW01_18870 are separated by 4 nucleotides CSW01_18870 and CSW01_18875 are separated by 137 nucleotides
CSW01_18860: CSW01_18860 - maltose/maltodextrin import ATP-binding protein MalK, at 896,049 to 897,170
_18860
CSW01_18865: CSW01_18865 - spermidine acetyltransferase, at 897,393 to 897,914
_18865
CSW01_18870: CSW01_18870 - transcriptional regulator, at 897,919 to 898,164
_18870
CSW01_18875: CSW01_18875 - SM-20 protein, at 898,302 to 898,919
_18875
Position (kb) 897
898 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 896.466 kb on - strand, within CSW01_18860 at 896.499 kb on - strand, within CSW01_18860 at 896.501 kb on + strand, within CSW01_18860 at 896.597 kb on + strand, within CSW01_18860 at 896.597 kb on + strand, within CSW01_18860 at 896.645 kb on - strand, within CSW01_18860 at 896.896 kb on - strand, within CSW01_18860 at 896.912 kb on + strand, within CSW01_18860 at 896.922 kb on + strand, within CSW01_18860 at 896.925 kb on - strand, within CSW01_18860 at 896.999 kb on + strand, within CSW01_18860 at 897.006 kb on + strand, within CSW01_18860 at 897.015 kb on - strand, within CSW01_18860 at 897.051 kb on - strand, within CSW01_18860 at 897.195 kb on + strand at 897.208 kb on - strand at 897.235 kb on + strand at 897.243 kb on + strand at 897.279 kb on - strand at 897.302 kb on + strand at 897.310 kb on - strand at 897.310 kb on - strand at 897.310 kb on - strand at 897.492 kb on - strand, within CSW01_18865 at 897.635 kb on - strand, within CSW01_18865 at 897.675 kb on + strand, within CSW01_18865 at 897.675 kb on + strand, within CSW01_18865 at 897.773 kb on + strand, within CSW01_18865 at 897.773 kb on + strand, within CSW01_18865 at 897.781 kb on - strand, within CSW01_18865 at 897.781 kb on - strand, within CSW01_18865 at 897.781 kb on - strand, within CSW01_18865 at 897.781 kb on - strand, within CSW01_18865 at 897.882 kb on - strand at 897.924 kb on - strand at 897.962 kb on - strand, within CSW01_18870 at 898.003 kb on + strand, within CSW01_18870 at 898.013 kb on - strand, within CSW01_18870 at 898.013 kb on - strand, within CSW01_18870 at 898.053 kb on - strand, within CSW01_18870 at 898.097 kb on - strand, within CSW01_18870 at 898.181 kb on - strand at 898.186 kb on - strand at 898.186 kb on - strand at 898.206 kb on + strand at 898.206 kb on + strand at 898.251 kb on + strand at 898.270 kb on - strand at 898.317 kb on - strand at 898.319 kb on + strand at 898.360 kb on + strand at 898.522 kb on + strand, within CSW01_18875 at 898.569 kb on + strand, within CSW01_18875 at 898.577 kb on + strand, within CSW01_18875 at 898.592 kb on - strand, within CSW01_18875 at 898.624 kb on + strand, within CSW01_18875 at 898.658 kb on + strand, within CSW01_18875 at 898.663 kb on + strand, within CSW01_18875 at 898.671 kb on - strand, within CSW01_18875 at 898.692 kb on + strand, within CSW01_18875 at 898.700 kb on - strand, within CSW01_18875 at 898.700 kb on - strand, within CSW01_18875 at 898.817 kb on + strand, within CSW01_18875 at 898.817 kb on + strand, within CSW01_18875 at 898.824 kb on + strand, within CSW01_18875 at 898.825 kb on - strand, within CSW01_18875 at 898.825 kb on - strand, within CSW01_18875 at 898.825 kb on - strand, within CSW01_18875 at 898.840 kb on - strand, within CSW01_18875
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 896,466 - CSW01_18860 0.37 -2.7 896,499 - CSW01_18860 0.40 +0.9 896,501 + CSW01_18860 0.40 -0.1 896,597 + CSW01_18860 0.49 +0.4 896,597 + CSW01_18860 0.49 -0.0 896,645 - CSW01_18860 0.53 +0.3 896,896 - CSW01_18860 0.75 +0.7 896,912 + CSW01_18860 0.77 -2.2 896,922 + CSW01_18860 0.78 +0.0 896,925 - CSW01_18860 0.78 +1.2 896,999 + CSW01_18860 0.85 -3.7 897,006 + CSW01_18860 0.85 -2.3 897,015 - CSW01_18860 0.86 -0.9 897,051 - CSW01_18860 0.89 +0.4 897,195 + -1.3 897,208 - +1.5 897,235 + -2.3 897,243 + +0.1 897,279 - -1.0 897,302 + +0.2 897,310 - +0.1 897,310 - +1.0 897,310 - -0.2 897,492 - CSW01_18865 0.19 -1.4 897,635 - CSW01_18865 0.46 -2.5 897,675 + CSW01_18865 0.54 +1.6 897,675 + CSW01_18865 0.54 +2.1 897,773 + CSW01_18865 0.73 -0.6 897,773 + CSW01_18865 0.73 +1.1 897,781 - CSW01_18865 0.74 -1.9 897,781 - CSW01_18865 0.74 -1.8 897,781 - CSW01_18865 0.74 +0.7 897,781 - CSW01_18865 0.74 +0.5 897,882 - +0.6 897,924 - +0.7 897,962 - CSW01_18870 0.17 +0.7 898,003 + CSW01_18870 0.34 +1.8 898,013 - CSW01_18870 0.38 +0.9 898,013 - CSW01_18870 0.38 -3.4 898,053 - CSW01_18870 0.54 +0.4 898,097 - CSW01_18870 0.72 -2.4 898,181 - +1.1 898,186 - -2.5 898,186 - +1.0 898,206 + +0.7 898,206 + +1.3 898,251 + -0.5 898,270 - -2.7 898,317 - +1.0 898,319 + +1.0 898,360 + +1.3 898,522 + CSW01_18875 0.36 +0.1 898,569 + CSW01_18875 0.43 -1.7 898,577 + CSW01_18875 0.44 -3.9 898,592 - CSW01_18875 0.47 -0.1 898,624 + CSW01_18875 0.52 -0.5 898,658 + CSW01_18875 0.58 +1.2 898,663 + CSW01_18875 0.58 -2.2 898,671 - CSW01_18875 0.60 +0.9 898,692 + CSW01_18875 0.63 -1.9 898,700 - CSW01_18875 0.64 -2.2 898,700 - CSW01_18875 0.64 -0.4 898,817 + CSW01_18875 0.83 +0.5 898,817 + CSW01_18875 0.83 -1.5 898,824 + CSW01_18875 0.84 -0.7 898,825 - CSW01_18875 0.85 -1.8 898,825 - CSW01_18875 0.85 -0.2 898,825 - CSW01_18875 0.85 -0.1 898,840 - CSW01_18875 0.87 +0.1
Or see this region's nucleotide sequence