Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18785 and CSW01_18790 are separated by 112 nucleotides CSW01_18790 and CSW01_18795 are separated by 348 nucleotides CSW01_18795 and CSW01_18800 are separated by 177 nucleotides
CSW01_18785: CSW01_18785 - DUF808 domain-containing protein, at 881,476 to 882,411
_18785
CSW01_18790: CSW01_18790 - metal-dependent phosphohydrolase, at 882,524 to 883,906
_18790
CSW01_18795: CSW01_18795 - cold-shock protein CspV, at 884,255 to 884,467
_18795
CSW01_18800: CSW01_18800 - hypothetical protein, at 884,645 to 884,854
_18800
Position (kb) 882
883
884 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 881.556 kb on + strand at 881.573 kb on - strand, within CSW01_18785 at 881.582 kb on + strand, within CSW01_18785 at 881.681 kb on + strand, within CSW01_18785 at 881.689 kb on - strand, within CSW01_18785 at 881.700 kb on - strand, within CSW01_18785 at 881.763 kb on - strand, within CSW01_18785 at 881.769 kb on - strand, within CSW01_18785 at 881.805 kb on + strand, within CSW01_18785 at 881.898 kb on + strand, within CSW01_18785 at 881.901 kb on - strand, within CSW01_18785 at 881.901 kb on - strand, within CSW01_18785 at 881.905 kb on + strand, within CSW01_18785 at 881.937 kb on + strand, within CSW01_18785 at 881.993 kb on - strand, within CSW01_18785 at 882.051 kb on + strand, within CSW01_18785 at 882.051 kb on + strand, within CSW01_18785 at 882.059 kb on - strand, within CSW01_18785 at 882.059 kb on - strand, within CSW01_18785 at 882.069 kb on + strand, within CSW01_18785 at 882.069 kb on - strand, within CSW01_18785 at 882.139 kb on + strand, within CSW01_18785 at 882.141 kb on + strand, within CSW01_18785 at 882.162 kb on - strand, within CSW01_18785 at 882.358 kb on + strand at 882.450 kb on + strand at 882.520 kb on - strand at 882.527 kb on + strand at 882.540 kb on - strand at 882.550 kb on - strand at 882.685 kb on + strand, within CSW01_18790 at 882.690 kb on + strand, within CSW01_18790 at 882.690 kb on + strand, within CSW01_18790 at 882.690 kb on + strand, within CSW01_18790 at 882.698 kb on - strand, within CSW01_18790 at 882.698 kb on - strand, within CSW01_18790 at 882.698 kb on - strand, within CSW01_18790 at 882.743 kb on + strand, within CSW01_18790 at 882.809 kb on - strand, within CSW01_18790 at 882.832 kb on - strand, within CSW01_18790 at 882.840 kb on - strand, within CSW01_18790 at 882.842 kb on + strand, within CSW01_18790 at 882.867 kb on + strand, within CSW01_18790 at 882.872 kb on + strand, within CSW01_18790 at 882.880 kb on - strand, within CSW01_18790 at 882.880 kb on - strand, within CSW01_18790 at 882.880 kb on - strand, within CSW01_18790 at 882.969 kb on - strand, within CSW01_18790 at 883.028 kb on + strand, within CSW01_18790 at 883.036 kb on + strand, within CSW01_18790 at 883.054 kb on + strand, within CSW01_18790 at 883.197 kb on - strand, within CSW01_18790 at 883.291 kb on - strand, within CSW01_18790 at 883.304 kb on + strand, within CSW01_18790 at 883.305 kb on - strand, within CSW01_18790 at 883.377 kb on + strand, within CSW01_18790 at 883.378 kb on - strand, within CSW01_18790 at 883.397 kb on + strand, within CSW01_18790 at 883.397 kb on + strand, within CSW01_18790 at 883.405 kb on - strand, within CSW01_18790 at 883.405 kb on - strand, within CSW01_18790 at 883.405 kb on - strand, within CSW01_18790 at 883.482 kb on - strand, within CSW01_18790 at 883.487 kb on + strand, within CSW01_18790 at 883.507 kb on + strand, within CSW01_18790 at 883.510 kb on - strand, within CSW01_18790 at 883.566 kb on + strand, within CSW01_18790 at 883.571 kb on + strand, within CSW01_18790 at 883.571 kb on + strand, within CSW01_18790 at 883.572 kb on - strand, within CSW01_18790 at 883.629 kb on - strand, within CSW01_18790 at 883.663 kb on - strand, within CSW01_18790 at 883.698 kb on - strand, within CSW01_18790 at 883.716 kb on + strand, within CSW01_18790 at 883.716 kb on + strand, within CSW01_18790 at 883.749 kb on + strand, within CSW01_18790 at 883.758 kb on - strand, within CSW01_18790 at 883.758 kb on - strand, within CSW01_18790 at 883.763 kb on - strand, within CSW01_18790 at 883.765 kb on + strand, within CSW01_18790 at 883.765 kb on + strand, within CSW01_18790 at 883.772 kb on - strand at 883.773 kb on - strand at 883.773 kb on - strand at 883.784 kb on + strand at 883.816 kb on + strand at 883.836 kb on + strand at 883.844 kb on - strand at 883.889 kb on + strand at 883.902 kb on - strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.940 kb on + strand at 883.941 kb on + strand at 883.948 kb on - strand at 883.948 kb on - strand at 883.948 kb on - strand at 883.948 kb on - strand at 883.948 kb on - strand at 883.950 kb on + strand at 883.950 kb on + strand at 883.955 kb on + strand at 883.955 kb on + strand at 883.955 kb on + strand at 883.958 kb on - strand at 883.958 kb on - strand at 883.960 kb on + strand at 883.963 kb on - strand at 883.963 kb on - strand at 883.968 kb on - strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.972 kb on + strand at 883.973 kb on - strand at 883.980 kb on - strand at 883.980 kb on - strand at 883.980 kb on - strand at 883.980 kb on - strand at 883.980 kb on - strand at 884.002 kb on + strand at 884.002 kb on + strand at 884.002 kb on + strand at 884.002 kb on + strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.010 kb on - strand at 884.070 kb on - strand at 884.304 kb on - strand, within CSW01_18795 at 884.321 kb on + strand, within CSW01_18795 at 884.323 kb on + strand, within CSW01_18795 at 884.323 kb on + strand, within CSW01_18795 at 884.323 kb on + strand, within CSW01_18795 at 884.331 kb on - strand, within CSW01_18795 at 884.331 kb on - strand, within CSW01_18795 at 884.342 kb on - strand, within CSW01_18795 at 884.353 kb on + strand, within CSW01_18795 at 884.368 kb on + strand, within CSW01_18795 at 884.368 kb on + strand, within CSW01_18795 at 884.368 kb on + strand, within CSW01_18795 at 884.368 kb on + strand, within CSW01_18795 at 884.402 kb on + strand, within CSW01_18795 at 884.404 kb on - strand, within CSW01_18795 at 884.411 kb on - strand, within CSW01_18795 at 884.425 kb on + strand, within CSW01_18795 at 884.436 kb on + strand, within CSW01_18795 at 884.444 kb on - strand, within CSW01_18795 at 884.444 kb on - strand, within CSW01_18795 at 884.445 kb on + strand, within CSW01_18795 at 884.445 kb on + strand, within CSW01_18795 at 884.445 kb on + strand, within CSW01_18795 at 884.446 kb on + strand at 884.462 kb on + strand at 884.478 kb on + strand at 884.485 kb on + strand at 884.492 kb on + strand at 884.500 kb on - strand at 884.547 kb on + strand at 884.547 kb on + strand at 884.555 kb on - strand at 884.579 kb on + strand at 884.584 kb on - strand at 884.587 kb on - strand at 884.595 kb on - strand at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.730 kb on + strand, within CSW01_18800 at 884.735 kb on + strand, within CSW01_18800 at 884.735 kb on + strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.738 kb on - strand, within CSW01_18800 at 884.743 kb on - strand, within CSW01_18800 at 884.751 kb on + strand, within CSW01_18800 at 884.836 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 881,556 + -0.3 881,573 - CSW01_18785 0.10 -1.2 881,582 + CSW01_18785 0.11 -1.4 881,681 + CSW01_18785 0.22 -3.2 881,689 - CSW01_18785 0.23 +1.1 881,700 - CSW01_18785 0.24 +0.5 881,763 - CSW01_18785 0.31 -0.6 881,769 - CSW01_18785 0.31 -1.8 881,805 + CSW01_18785 0.35 +0.1 881,898 + CSW01_18785 0.45 -0.7 881,901 - CSW01_18785 0.45 -0.8 881,901 - CSW01_18785 0.45 +1.2 881,905 + CSW01_18785 0.46 -2.9 881,937 + CSW01_18785 0.49 -0.9 881,993 - CSW01_18785 0.55 +1.5 882,051 + CSW01_18785 0.61 +0.5 882,051 + CSW01_18785 0.61 -0.4 882,059 - CSW01_18785 0.62 +1.1 882,059 - CSW01_18785 0.62 -3.2 882,069 + CSW01_18785 0.63 -3.2 882,069 - CSW01_18785 0.63 +0.3 882,139 + CSW01_18785 0.71 +0.9 882,141 + CSW01_18785 0.71 -1.0 882,162 - CSW01_18785 0.73 +0.9 882,358 + -4.2 882,450 + -1.0 882,520 - +0.2 882,527 + -0.3 882,540 - +0.9 882,550 - +1.5 882,685 + CSW01_18790 0.12 +0.2 882,690 + CSW01_18790 0.12 -0.3 882,690 + CSW01_18790 0.12 +0.2 882,690 + CSW01_18790 0.12 +0.1 882,698 - CSW01_18790 0.13 -0.8 882,698 - CSW01_18790 0.13 -0.1 882,698 - CSW01_18790 0.13 -2.1 882,743 + CSW01_18790 0.16 -2.7 882,809 - CSW01_18790 0.21 -2.5 882,832 - CSW01_18790 0.22 +0.2 882,840 - CSW01_18790 0.23 +0.1 882,842 + CSW01_18790 0.23 -0.6 882,867 + CSW01_18790 0.25 +0.5 882,872 + CSW01_18790 0.25 -2.6 882,880 - CSW01_18790 0.26 -1.0 882,880 - CSW01_18790 0.26 -3.5 882,880 - CSW01_18790 0.26 -2.7 882,969 - CSW01_18790 0.32 +1.4 883,028 + CSW01_18790 0.36 +1.7 883,036 + CSW01_18790 0.37 -0.8 883,054 + CSW01_18790 0.38 +0.3 883,197 - CSW01_18790 0.49 -0.8 883,291 - CSW01_18790 0.55 -0.1 883,304 + CSW01_18790 0.56 -3.1 883,305 - CSW01_18790 0.56 -0.1 883,377 + CSW01_18790 0.62 -0.1 883,378 - CSW01_18790 0.62 +0.2 883,397 + CSW01_18790 0.63 -0.2 883,397 + CSW01_18790 0.63 -1.4 883,405 - CSW01_18790 0.64 +0.2 883,405 - CSW01_18790 0.64 -3.7 883,405 - CSW01_18790 0.64 -0.4 883,482 - CSW01_18790 0.69 -2.4 883,487 + CSW01_18790 0.70 +1.1 883,507 + CSW01_18790 0.71 -0.4 883,510 - CSW01_18790 0.71 -1.0 883,566 + CSW01_18790 0.75 -2.6 883,571 + CSW01_18790 0.76 -2.6 883,571 + CSW01_18790 0.76 +0.2 883,572 - CSW01_18790 0.76 +1.5 883,629 - CSW01_18790 0.80 +0.2 883,663 - CSW01_18790 0.82 -0.5 883,698 - CSW01_18790 0.85 -1.8 883,716 + CSW01_18790 0.86 +0.9 883,716 + CSW01_18790 0.86 -1.9 883,749 + CSW01_18790 0.89 +1.2 883,758 - CSW01_18790 0.89 -0.8 883,758 - CSW01_18790 0.89 -0.9 883,763 - CSW01_18790 0.90 +1.0 883,765 + CSW01_18790 0.90 -1.2 883,765 + CSW01_18790 0.90 -1.1 883,772 - -1.5 883,773 - +1.2 883,773 - -0.7 883,784 + -0.4 883,816 + -2.9 883,836 + -3.3 883,844 - +0.1 883,889 + -2.8 883,902 - -2.4 883,940 + +0.4 883,940 + -1.6 883,940 + -1.5 883,940 + +1.0 883,940 + -3.4 883,940 + +0.1 883,941 + -2.1 883,948 - +0.5 883,948 - +0.1 883,948 - -1.0 883,948 - +0.9 883,948 - -1.0 883,950 + -0.5 883,950 + -0.8 883,955 + -0.3 883,955 + -0.5 883,955 + -0.1 883,958 - -2.8 883,958 - -1.1 883,960 + +0.6 883,963 - +1.8 883,963 - -2.9 883,968 - -1.1 883,972 + +1.5 883,972 + -2.5 883,972 + -1.4 883,972 + -0.6 883,972 + +0.1 883,972 + -2.7 883,972 + -0.2 883,973 - +0.3 883,980 - +0.3 883,980 - +1.2 883,980 - -1.2 883,980 - -1.1 883,980 - +1.1 884,002 + +1.0 884,002 + -0.3 884,002 + +0.4 884,002 + -3.5 884,010 - +0.2 884,010 - -1.7 884,010 - -1.2 884,010 - +0.1 884,010 - +1.5 884,010 - +1.4 884,010 - -4.2 884,010 - +1.7 884,010 - -1.9 884,010 - -0.5 884,010 - +0.3 884,010 - +0.1 884,010 - -0.9 884,010 - -1.7 884,010 - +0.2 884,010 - +0.9 884,010 - -1.3 884,070 - +1.2 884,304 - CSW01_18795 0.23 -2.5 884,321 + CSW01_18795 0.31 -1.2 884,323 + CSW01_18795 0.32 +2.2 884,323 + CSW01_18795 0.32 -2.4 884,323 + CSW01_18795 0.32 -0.9 884,331 - CSW01_18795 0.36 -1.9 884,331 - CSW01_18795 0.36 -2.2 884,342 - CSW01_18795 0.41 +2.2 884,353 + CSW01_18795 0.46 +0.4 884,368 + CSW01_18795 0.53 +0.6 884,368 + CSW01_18795 0.53 +3.0 884,368 + CSW01_18795 0.53 +2.5 884,368 + CSW01_18795 0.53 -2.6 884,402 + CSW01_18795 0.69 -0.4 884,404 - CSW01_18795 0.70 -1.4 884,411 - CSW01_18795 0.73 -3.2 884,425 + CSW01_18795 0.80 -3.8 884,436 + CSW01_18795 0.85 +0.6 884,444 - CSW01_18795 0.89 -2.6 884,444 - CSW01_18795 0.89 -1.6 884,445 + CSW01_18795 0.89 -1.1 884,445 + CSW01_18795 0.89 +1.4 884,445 + CSW01_18795 0.89 +1.3 884,446 + +0.7 884,462 + -0.3 884,478 + -0.9 884,485 + +1.0 884,492 + +0.5 884,500 - -1.0 884,547 + +1.6 884,547 + -3.9 884,555 - -0.4 884,579 + -0.8 884,584 - -2.6 884,587 - +1.6 884,595 - -0.7 884,730 + CSW01_18800 0.40 -0.1 884,730 + CSW01_18800 0.40 +1.2 884,730 + CSW01_18800 0.40 -2.3 884,730 + CSW01_18800 0.40 -0.1 884,730 + CSW01_18800 0.40 -1.6 884,730 + CSW01_18800 0.40 -4.2 884,730 + CSW01_18800 0.40 -4.0 884,735 + CSW01_18800 0.43 -2.0 884,735 + CSW01_18800 0.43 -0.9 884,738 - CSW01_18800 0.44 +0.5 884,738 - CSW01_18800 0.44 +0.9 884,738 - CSW01_18800 0.44 +0.8 884,738 - CSW01_18800 0.44 -2.6 884,738 - CSW01_18800 0.44 -1.5 884,738 - CSW01_18800 0.44 -0.3 884,738 - CSW01_18800 0.44 -0.1 884,738 - CSW01_18800 0.44 -3.0 884,738 - CSW01_18800 0.44 -0.3 884,738 - CSW01_18800 0.44 -0.3 884,738 - CSW01_18800 0.44 +0.9 884,738 - CSW01_18800 0.44 +0.1 884,738 - CSW01_18800 0.44 +1.6 884,738 - CSW01_18800 0.44 -0.7 884,743 - CSW01_18800 0.47 +0.4 884,751 + CSW01_18800 0.50 -0.4 884,836 - -0.2
Or see this region's nucleotide sequence