Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18780

Experiment: ICP1_phage_0.23_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18770 and CSW01_18775 overlap by 4 nucleotidesCSW01_18775 and CSW01_18780 are separated by 49 nucleotidesCSW01_18780 and CSW01_18785 are separated by 113 nucleotides CSW01_18770: CSW01_18770 - DUF805 domain-containing protein, at 879,329 to 879,679 _18770 CSW01_18775: CSW01_18775 - hypothetical protein, at 879,676 to 880,185 _18775 CSW01_18780: CSW01_18780 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 880,235 to 881,362 _18780 CSW01_18785: CSW01_18785 - DUF808 domain-containing protein, at 881,476 to 882,411 _18785 Position (kb) 880 881 882Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 879.428 kb on + strand, within CSW01_18770at 879.436 kb on - strand, within CSW01_18770at 879.449 kb on - strand, within CSW01_18770at 879.456 kb on + strand, within CSW01_18770at 879.456 kb on + strand, within CSW01_18770at 879.456 kb on + strand, within CSW01_18770at 879.464 kb on - strand, within CSW01_18770at 879.464 kb on - strand, within CSW01_18770at 879.480 kb on - strand, within CSW01_18770at 879.484 kb on - strand, within CSW01_18770at 879.494 kb on - strand, within CSW01_18770at 879.506 kb on + strand, within CSW01_18770at 879.508 kb on + strand, within CSW01_18770at 879.519 kb on + strand, within CSW01_18770at 879.565 kb on - strand, within CSW01_18770at 879.693 kb on - strandat 879.704 kb on + strandat 879.734 kb on - strand, within CSW01_18775at 879.758 kb on - strand, within CSW01_18775at 879.758 kb on - strand, within CSW01_18775at 879.783 kb on - strand, within CSW01_18775at 879.873 kb on - strand, within CSW01_18775at 879.993 kb on - strand, within CSW01_18775at 880.066 kb on - strand, within CSW01_18775at 880.288 kb on + strandat 880.320 kb on + strandat 880.328 kb on - strandat 880.365 kb on - strand, within CSW01_18780at 880.435 kb on + strand, within CSW01_18780at 880.455 kb on + strand, within CSW01_18780at 880.606 kb on - strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.696 kb on + strand, within CSW01_18780at 880.772 kb on - strand, within CSW01_18780at 880.772 kb on - strand, within CSW01_18780at 880.842 kb on + strand, within CSW01_18780at 880.881 kb on + strand, within CSW01_18780at 881.000 kb on - strand, within CSW01_18780at 881.027 kb on + strand, within CSW01_18780at 881.094 kb on - strand, within CSW01_18780at 881.128 kb on - strand, within CSW01_18780at 881.234 kb on + strand, within CSW01_18780at 881.283 kb on + strandat 881.293 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.306 kb on - strandat 881.306 kb on - strandat 881.306 kb on - strandat 881.333 kb on - strandat 881.359 kb on + strandat 881.359 kb on + strandat 881.359 kb on + strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.372 kb on - strandat 881.521 kb on - strandat 881.556 kb on + strandat 881.573 kb on - strand, within CSW01_18785at 881.582 kb on + strand, within CSW01_18785at 881.681 kb on + strand, within CSW01_18785at 881.689 kb on - strand, within CSW01_18785at 881.700 kb on - strand, within CSW01_18785at 881.763 kb on - strand, within CSW01_18785at 881.769 kb on - strand, within CSW01_18785at 881.805 kb on + strand, within CSW01_18785at 881.898 kb on + strand, within CSW01_18785at 881.901 kb on - strand, within CSW01_18785at 881.901 kb on - strand, within CSW01_18785at 881.905 kb on + strand, within CSW01_18785at 881.937 kb on + strand, within CSW01_18785at 881.993 kb on - strand, within CSW01_18785at 882.051 kb on + strand, within CSW01_18785at 882.051 kb on + strand, within CSW01_18785at 882.059 kb on - strand, within CSW01_18785at 882.059 kb on - strand, within CSW01_18785at 882.069 kb on + strand, within CSW01_18785at 882.069 kb on - strand, within CSW01_18785at 882.139 kb on + strand, within CSW01_18785at 882.141 kb on + strand, within CSW01_18785at 882.162 kb on - strand, within CSW01_18785at 882.358 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
remove
879,428 + CSW01_18770 0.28 +0.8
879,436 - CSW01_18770 0.30 -0.2
879,449 - CSW01_18770 0.34 -2.2
879,456 + CSW01_18770 0.36 -1.9
879,456 + CSW01_18770 0.36 -0.6
879,456 + CSW01_18770 0.36 -0.7
879,464 - CSW01_18770 0.38 -2.0
879,464 - CSW01_18770 0.38 -0.5
879,480 - CSW01_18770 0.43 +0.8
879,484 - CSW01_18770 0.44 -3.3
879,494 - CSW01_18770 0.47 -2.9
879,506 + CSW01_18770 0.50 -1.7
879,508 + CSW01_18770 0.51 +1.5
879,519 + CSW01_18770 0.54 -2.5
879,565 - CSW01_18770 0.67 +0.7
879,693 - -2.0
879,704 + -1.7
879,734 - CSW01_18775 0.11 -2.8
879,758 - CSW01_18775 0.16 -0.8
879,758 - CSW01_18775 0.16 -1.3
879,783 - CSW01_18775 0.21 -3.0
879,873 - CSW01_18775 0.39 +1.0
879,993 - CSW01_18775 0.62 +0.4
880,066 - CSW01_18775 0.76 -2.3
880,288 + -2.0
880,320 + +0.4
880,328 - -0.2
880,365 - CSW01_18780 0.12 -2.0
880,435 + CSW01_18780 0.18 +1.7
880,455 + CSW01_18780 0.20 +2.6
880,606 - CSW01_18780 0.33 +0.4
880,608 + CSW01_18780 0.33 -0.0
880,608 + CSW01_18780 0.33 +1.5
880,608 + CSW01_18780 0.33 -1.0
880,608 + CSW01_18780 0.33 -0.9
880,608 + CSW01_18780 0.33 -0.8
880,608 + CSW01_18780 0.33 +0.6
880,608 + CSW01_18780 0.33 -2.8
880,616 - CSW01_18780 0.34 -3.7
880,616 - CSW01_18780 0.34 +0.3
880,616 - CSW01_18780 0.34 +0.9
880,616 - CSW01_18780 0.34 -1.8
880,696 + CSW01_18780 0.41 +1.4
880,772 - CSW01_18780 0.48 +1.9
880,772 - CSW01_18780 0.48 -0.6
880,842 + CSW01_18780 0.54 +2.0
880,881 + CSW01_18780 0.57 -2.4
881,000 - CSW01_18780 0.68 +0.2
881,027 + CSW01_18780 0.70 -0.5
881,094 - CSW01_18780 0.76 +0.2
881,128 - CSW01_18780 0.79 +0.2
881,234 + CSW01_18780 0.89 +1.0
881,283 + -1.6
881,293 + -1.0
881,298 + -0.0
881,298 + +0.0
881,298 + -3.2
881,298 + -3.3
881,298 + +1.0
881,298 + -0.5
881,306 - -3.9
881,306 - +0.7
881,306 - -1.5
881,333 - -2.4
881,359 + -2.6
881,359 + +0.2
881,359 + +0.2
881,367 - -0.4
881,367 - +0.5
881,367 - -1.2
881,367 - +0.7
881,372 - +0.1
881,521 - -1.3
881,556 + -0.3
881,573 - CSW01_18785 0.10 -1.2
881,582 + CSW01_18785 0.11 -1.4
881,681 + CSW01_18785 0.22 -3.2
881,689 - CSW01_18785 0.23 +1.1
881,700 - CSW01_18785 0.24 +0.5
881,763 - CSW01_18785 0.31 -0.6
881,769 - CSW01_18785 0.31 -1.8
881,805 + CSW01_18785 0.35 +0.1
881,898 + CSW01_18785 0.45 -0.7
881,901 - CSW01_18785 0.45 -0.8
881,901 - CSW01_18785 0.45 +1.2
881,905 + CSW01_18785 0.46 -2.9
881,937 + CSW01_18785 0.49 -0.9
881,993 - CSW01_18785 0.55 +1.5
882,051 + CSW01_18785 0.61 +0.5
882,051 + CSW01_18785 0.61 -0.4
882,059 - CSW01_18785 0.62 +1.1
882,059 - CSW01_18785 0.62 -3.2
882,069 + CSW01_18785 0.63 -3.2
882,069 - CSW01_18785 0.63 +0.3
882,139 + CSW01_18785 0.71 +0.9
882,141 + CSW01_18785 0.71 -1.0
882,162 - CSW01_18785 0.73 +0.9
882,358 + -4.2

Or see this region's nucleotide sequence