Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18750

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18740 and CSW01_18745 are separated by 165 nucleotidesCSW01_18745 and CSW01_18750 are separated by 146 nucleotidesCSW01_18750 and CSW01_18755 are separated by 62 nucleotides CSW01_18740: CSW01_18740 - acyltransferase, at 870,674 to 871,792 _18740 CSW01_18745: CSW01_18745 - AraC family transcriptional regulator, at 871,958 to 872,566 _18745 CSW01_18750: CSW01_18750 - methyl-accepting chemotaxis protein, at 872,713 to 874,587 _18750 CSW01_18755: CSW01_18755 - flavodoxin, at 874,650 to 876,467 _18755 Position (kb) 872 873 874 875Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 871.858 kb on + strandat 871.919 kb on + strandat 871.992 kb on + strandat 872.089 kb on - strand, within CSW01_18745at 872.113 kb on - strand, within CSW01_18745at 872.131 kb on - strand, within CSW01_18745at 872.131 kb on - strand, within CSW01_18745at 872.131 kb on - strand, within CSW01_18745at 872.131 kb on - strand, within CSW01_18745at 872.175 kb on - strand, within CSW01_18745at 872.201 kb on - strand, within CSW01_18745at 872.282 kb on + strand, within CSW01_18745at 872.297 kb on - strand, within CSW01_18745at 872.322 kb on + strand, within CSW01_18745at 872.322 kb on + strand, within CSW01_18745at 872.330 kb on - strand, within CSW01_18745at 872.330 kb on - strand, within CSW01_18745at 872.337 kb on + strand, within CSW01_18745at 872.356 kb on - strand, within CSW01_18745at 872.377 kb on - strand, within CSW01_18745at 872.477 kb on + strand, within CSW01_18745at 872.533 kb on + strandat 872.775 kb on - strandat 872.834 kb on + strandat 872.920 kb on - strand, within CSW01_18750at 873.184 kb on + strand, within CSW01_18750at 873.192 kb on + strand, within CSW01_18750at 873.202 kb on - strand, within CSW01_18750at 873.210 kb on - strand, within CSW01_18750at 873.258 kb on + strand, within CSW01_18750at 873.274 kb on - strand, within CSW01_18750at 873.285 kb on + strand, within CSW01_18750at 873.293 kb on + strand, within CSW01_18750at 873.294 kb on - strand, within CSW01_18750at 873.418 kb on + strand, within CSW01_18750at 873.418 kb on + strand, within CSW01_18750at 873.418 kb on + strand, within CSW01_18750at 873.418 kb on + strand, within CSW01_18750at 873.544 kb on + strand, within CSW01_18750at 873.552 kb on - strand, within CSW01_18750at 873.552 kb on - strand, within CSW01_18750at 873.788 kb on + strand, within CSW01_18750at 873.809 kb on + strand, within CSW01_18750at 873.809 kb on + strand, within CSW01_18750at 873.809 kb on + strand, within CSW01_18750at 873.836 kb on + strand, within CSW01_18750at 873.844 kb on - strand, within CSW01_18750at 874.058 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.198 kb on - strand, within CSW01_18750at 874.217 kb on + strand, within CSW01_18750at 874.225 kb on - strand, within CSW01_18750at 874.225 kb on - strand, within CSW01_18750at 874.391 kb on + strand, within CSW01_18750at 874.590 kb on - strandat 874.738 kb on + strandat 874.738 kb on + strandat 874.739 kb on + strandat 874.746 kb on - strandat 874.746 kb on - strandat 874.746 kb on - strandat 874.747 kb on - strandat 874.883 kb on + strand, within CSW01_18755at 875.093 kb on + strand, within CSW01_18755at 875.101 kb on - strand, within CSW01_18755at 875.125 kb on + strand, within CSW01_18755at 875.190 kb on + strand, within CSW01_18755at 875.190 kb on + strand, within CSW01_18755at 875.190 kb on + strand, within CSW01_18755at 875.198 kb on - strand, within CSW01_18755at 875.198 kb on - strand, within CSW01_18755at 875.198 kb on - strand, within CSW01_18755at 875.198 kb on - strand, within CSW01_18755at 875.254 kb on - strand, within CSW01_18755at 875.270 kb on + strand, within CSW01_18755at 875.270 kb on + strand, within CSW01_18755at 875.270 kb on + strand, within CSW01_18755at 875.270 kb on + strand, within CSW01_18755at 875.278 kb on - strand, within CSW01_18755at 875.278 kb on - strand, within CSW01_18755at 875.278 kb on - strand, within CSW01_18755at 875.323 kb on + strand, within CSW01_18755at 875.342 kb on + strand, within CSW01_18755at 875.347 kb on + strand, within CSW01_18755at 875.347 kb on + strand, within CSW01_18755at 875.487 kb on - strand, within CSW01_18755at 875.497 kb on - strand, within CSW01_18755at 875.536 kb on + strand, within CSW01_18755at 875.549 kb on - strand, within CSW01_18755at 875.567 kb on + strand, within CSW01_18755at 875.567 kb on + strand, within CSW01_18755at 875.567 kb on + strand, within CSW01_18755at 875.575 kb on - strand, within CSW01_18755at 875.575 kb on - strand, within CSW01_18755at 875.575 kb on - strand, within CSW01_18755

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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871,858 + -0.1
871,919 + +0.2
871,992 + -4.0
872,089 - CSW01_18745 0.22 -4.4
872,113 - CSW01_18745 0.25 +0.3
872,131 - CSW01_18745 0.28 +2.1
872,131 - CSW01_18745 0.28 -1.3
872,131 - CSW01_18745 0.28 -3.3
872,131 - CSW01_18745 0.28 +1.3
872,175 - CSW01_18745 0.36 -1.2
872,201 - CSW01_18745 0.40 +0.8
872,282 + CSW01_18745 0.53 -0.1
872,297 - CSW01_18745 0.56 +0.0
872,322 + CSW01_18745 0.60 +1.1
872,322 + CSW01_18745 0.60 +0.2
872,330 - CSW01_18745 0.61 +0.1
872,330 - CSW01_18745 0.61 -0.2
872,337 + CSW01_18745 0.62 -3.4
872,356 - CSW01_18745 0.65 +1.2
872,377 - CSW01_18745 0.69 +0.2
872,477 + CSW01_18745 0.85 -0.1
872,533 + -3.1
872,775 - -0.7
872,834 + +1.1
872,920 - CSW01_18750 0.11 +0.8
873,184 + CSW01_18750 0.25 -1.9
873,192 + CSW01_18750 0.26 -0.1
873,202 - CSW01_18750 0.26 +2.8
873,210 - CSW01_18750 0.27 -3.1
873,258 + CSW01_18750 0.29 -1.2
873,274 - CSW01_18750 0.30 -0.2
873,285 + CSW01_18750 0.31 -1.0
873,293 + CSW01_18750 0.31 -2.7
873,294 - CSW01_18750 0.31 +0.7
873,418 + CSW01_18750 0.38 +2.1
873,418 + CSW01_18750 0.38 -1.4
873,418 + CSW01_18750 0.38 -1.2
873,418 + CSW01_18750 0.38 +0.2
873,544 + CSW01_18750 0.44 -2.7
873,552 - CSW01_18750 0.45 +1.0
873,552 - CSW01_18750 0.45 -1.9
873,788 + CSW01_18750 0.57 +0.4
873,809 + CSW01_18750 0.58 +1.1
873,809 + CSW01_18750 0.58 +1.0
873,809 + CSW01_18750 0.58 +0.0
873,836 + CSW01_18750 0.60 +0.8
873,844 - CSW01_18750 0.60 +0.8
874,058 - CSW01_18750 0.72 -0.8
874,079 - CSW01_18750 0.73 -1.5
874,079 - CSW01_18750 0.73 -1.7
874,079 - CSW01_18750 0.73 +1.0
874,079 - CSW01_18750 0.73 +0.0
874,079 - CSW01_18750 0.73 -2.3
874,079 - CSW01_18750 0.73 +0.9
874,079 - CSW01_18750 0.73 -0.0
874,198 - CSW01_18750 0.79 +0.4
874,217 + CSW01_18750 0.80 -1.8
874,225 - CSW01_18750 0.81 -2.7
874,225 - CSW01_18750 0.81 +0.2
874,391 + CSW01_18750 0.89 -2.5
874,590 - -1.2
874,738 + +0.6
874,738 + +0.1
874,739 + +0.2
874,746 - +0.2
874,746 - +1.3
874,746 - +1.0
874,747 - -2.5
874,883 + CSW01_18755 0.13 -2.6
875,093 + CSW01_18755 0.24 -0.0
875,101 - CSW01_18755 0.25 -1.6
875,125 + CSW01_18755 0.26 -0.4
875,190 + CSW01_18755 0.30 -1.4
875,190 + CSW01_18755 0.30 -1.6
875,190 + CSW01_18755 0.30 +0.2
875,198 - CSW01_18755 0.30 +0.0
875,198 - CSW01_18755 0.30 -1.2
875,198 - CSW01_18755 0.30 -0.3
875,198 - CSW01_18755 0.30 +0.6
875,254 - CSW01_18755 0.33 +0.2
875,270 + CSW01_18755 0.34 -4.0
875,270 + CSW01_18755 0.34 +0.1
875,270 + CSW01_18755 0.34 +0.0
875,270 + CSW01_18755 0.34 -1.4
875,278 - CSW01_18755 0.35 -0.6
875,278 - CSW01_18755 0.35 +1.4
875,278 - CSW01_18755 0.35 +1.1
875,323 + CSW01_18755 0.37 -0.5
875,342 + CSW01_18755 0.38 +0.5
875,347 + CSW01_18755 0.38 +0.2
875,347 + CSW01_18755 0.38 +0.8
875,487 - CSW01_18755 0.46 -2.0
875,497 - CSW01_18755 0.47 +1.5
875,536 + CSW01_18755 0.49 -0.2
875,549 - CSW01_18755 0.49 -1.2
875,567 + CSW01_18755 0.50 -3.8
875,567 + CSW01_18755 0.50 -1.5
875,567 + CSW01_18755 0.50 +0.6
875,575 - CSW01_18755 0.51 -1.4
875,575 - CSW01_18755 0.51 +0.9
875,575 - CSW01_18755 0.51 -0.7

Or see this region's nucleotide sequence