Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18730 and CSW01_18735 are separated by 202 nucleotides CSW01_18735 and CSW01_18740 are separated by 60 nucleotides CSW01_18740 and CSW01_18745 are separated by 165 nucleotides CSW01_18745 and CSW01_18750 are separated by 146 nucleotides
CSW01_18730: CSW01_18730 - DUF406 domain-containing protein, at 869,509 to 869,811
_18730
CSW01_18735: CSW01_18735 - hypothetical protein, at 870,014 to 870,613
_18735
CSW01_18740: CSW01_18740 - acyltransferase, at 870,674 to 871,792
_18740
CSW01_18745: CSW01_18745 - AraC family transcriptional regulator, at 871,958 to 872,566
_18745
CSW01_18750: CSW01_18750 - methyl-accepting chemotaxis protein, at 872,713 to 874,587
_18750
Position (kb) 870
871
872 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 869.697 kb on + strand, within CSW01_18730 at 869.697 kb on - strand, within CSW01_18730 at 869.952 kb on + strand at 869.963 kb on + strand at 869.970 kb on + strand at 870.006 kb on - strand at 870.007 kb on - strand at 870.087 kb on + strand, within CSW01_18735 at 870.092 kb on + strand, within CSW01_18735 at 870.092 kb on + strand, within CSW01_18735 at 870.100 kb on - strand, within CSW01_18735 at 870.120 kb on + strand, within CSW01_18735 at 870.120 kb on + strand, within CSW01_18735 at 870.128 kb on - strand, within CSW01_18735 at 870.128 kb on - strand, within CSW01_18735 at 870.139 kb on + strand, within CSW01_18735 at 870.139 kb on + strand, within CSW01_18735 at 870.147 kb on - strand, within CSW01_18735 at 870.225 kb on + strand, within CSW01_18735 at 870.225 kb on + strand, within CSW01_18735 at 870.258 kb on - strand, within CSW01_18735 at 870.342 kb on + strand, within CSW01_18735 at 870.342 kb on + strand, within CSW01_18735 at 870.350 kb on - strand, within CSW01_18735 at 870.406 kb on - strand, within CSW01_18735 at 870.430 kb on + strand, within CSW01_18735 at 870.435 kb on + strand, within CSW01_18735 at 870.582 kb on + strand at 871.858 kb on + strand at 871.919 kb on + strand at 871.992 kb on + strand at 872.089 kb on - strand, within CSW01_18745 at 872.113 kb on - strand, within CSW01_18745 at 872.131 kb on - strand, within CSW01_18745 at 872.131 kb on - strand, within CSW01_18745 at 872.131 kb on - strand, within CSW01_18745 at 872.131 kb on - strand, within CSW01_18745 at 872.175 kb on - strand, within CSW01_18745 at 872.201 kb on - strand, within CSW01_18745 at 872.282 kb on + strand, within CSW01_18745 at 872.297 kb on - strand, within CSW01_18745 at 872.322 kb on + strand, within CSW01_18745 at 872.322 kb on + strand, within CSW01_18745 at 872.330 kb on - strand, within CSW01_18745 at 872.330 kb on - strand, within CSW01_18745 at 872.337 kb on + strand, within CSW01_18745 at 872.356 kb on - strand, within CSW01_18745 at 872.377 kb on - strand, within CSW01_18745 at 872.477 kb on + strand, within CSW01_18745 at 872.533 kb on + strand at 872.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 869,697 + CSW01_18730 0.62 -3.2 869,697 - CSW01_18730 0.62 -2.0 869,952 + +1.5 869,963 + +0.9 869,970 + -2.4 870,006 - -1.2 870,007 - -1.5 870,087 + CSW01_18735 0.12 -1.6 870,092 + CSW01_18735 0.13 -1.6 870,092 + CSW01_18735 0.13 +1.0 870,100 - CSW01_18735 0.14 +0.8 870,120 + CSW01_18735 0.18 +2.5 870,120 + CSW01_18735 0.18 -1.0 870,128 - CSW01_18735 0.19 -0.0 870,128 - CSW01_18735 0.19 -2.8 870,139 + CSW01_18735 0.21 +1.2 870,139 + CSW01_18735 0.21 +0.1 870,147 - CSW01_18735 0.22 -1.8 870,225 + CSW01_18735 0.35 -1.6 870,225 + CSW01_18735 0.35 -2.1 870,258 - CSW01_18735 0.41 +0.9 870,342 + CSW01_18735 0.55 +1.0 870,342 + CSW01_18735 0.55 -0.8 870,350 - CSW01_18735 0.56 -2.6 870,406 - CSW01_18735 0.65 -3.2 870,430 + CSW01_18735 0.69 +1.9 870,435 + CSW01_18735 0.70 -1.0 870,582 + +1.3 871,858 + -0.1 871,919 + +0.2 871,992 + -4.0 872,089 - CSW01_18745 0.22 -4.4 872,113 - CSW01_18745 0.25 +0.3 872,131 - CSW01_18745 0.28 +2.1 872,131 - CSW01_18745 0.28 -1.3 872,131 - CSW01_18745 0.28 -3.3 872,131 - CSW01_18745 0.28 +1.3 872,175 - CSW01_18745 0.36 -1.2 872,201 - CSW01_18745 0.40 +0.8 872,282 + CSW01_18745 0.53 -0.1 872,297 - CSW01_18745 0.56 +0.0 872,322 + CSW01_18745 0.60 +1.1 872,322 + CSW01_18745 0.60 +0.2 872,330 - CSW01_18745 0.61 +0.1 872,330 - CSW01_18745 0.61 -0.2 872,337 + CSW01_18745 0.62 -3.4 872,356 - CSW01_18745 0.65 +1.2 872,377 - CSW01_18745 0.69 +0.2 872,477 + CSW01_18745 0.85 -0.1 872,533 + -3.1 872,775 - -0.7
Or see this region's nucleotide sequence