Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18600

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18590 and CSW01_18595 overlap by 7 nucleotidesCSW01_18595 and CSW01_18600 are separated by 77 nucleotidesCSW01_18600 and CSW01_18605 are separated by 111 nucleotidesCSW01_18605 and CSW01_18610 are separated by 105 nucleotides CSW01_18590: CSW01_18590 - LysR family transcriptional regulator, at 840,323 to 841,261 _18590 CSW01_18595: CSW01_18595 - VOC family protein, at 841,255 to 841,638 _18595 CSW01_18600: CSW01_18600 - PepSY domain-containing protein, at 841,716 to 843,128 _18600 CSW01_18605: CSW01_18605 - hypothetical protein, at 843,240 to 843,638 _18605 CSW01_18610: CSW01_18610 - cytochrome b562 family protein, at 843,744 to 844,127 _18610 Position (kb) 841 842 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 840.843 kb on + strand, within CSW01_18590at 840.862 kb on + strand, within CSW01_18590at 840.862 kb on + strand, within CSW01_18590at 840.915 kb on - strand, within CSW01_18590at 840.972 kb on + strand, within CSW01_18590at 840.980 kb on - strand, within CSW01_18590at 840.980 kb on - strand, within CSW01_18590at 841.004 kb on - strand, within CSW01_18590at 841.092 kb on - strand, within CSW01_18590at 841.227 kb on + strandat 841.227 kb on + strandat 841.289 kb on + strandat 841.356 kb on - strand, within CSW01_18595at 841.398 kb on + strand, within CSW01_18595at 841.552 kb on - strand, within CSW01_18595at 841.552 kb on - strand, within CSW01_18595at 841.576 kb on + strand, within CSW01_18595at 841.660 kb on - strandat 841.677 kb on + strandat 841.715 kb on - strandat 841.790 kb on - strandat 841.816 kb on + strandat 841.874 kb on + strand, within CSW01_18600at 841.874 kb on + strand, within CSW01_18600at 841.881 kb on + strand, within CSW01_18600at 841.923 kb on + strand, within CSW01_18600at 841.923 kb on + strand, within CSW01_18600at 841.923 kb on + strand, within CSW01_18600at 841.944 kb on - strand, within CSW01_18600at 841.965 kb on - strand, within CSW01_18600at 842.002 kb on + strand, within CSW01_18600at 842.194 kb on + strand, within CSW01_18600at 842.204 kb on + strand, within CSW01_18600at 842.212 kb on - strand, within CSW01_18600at 842.218 kb on + strand, within CSW01_18600at 842.218 kb on + strand, within CSW01_18600at 842.218 kb on + strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.248 kb on - strand, within CSW01_18600at 842.282 kb on + strand, within CSW01_18600at 842.401 kb on + strand, within CSW01_18600at 842.401 kb on + strand, within CSW01_18600at 842.422 kb on + strand, within CSW01_18600at 842.494 kb on + strand, within CSW01_18600at 842.494 kb on + strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.502 kb on - strand, within CSW01_18600at 842.520 kb on - strand, within CSW01_18600at 842.551 kb on + strand, within CSW01_18600at 842.738 kb on + strand, within CSW01_18600at 842.761 kb on - strand, within CSW01_18600at 842.764 kb on - strand, within CSW01_18600at 842.766 kb on + strand, within CSW01_18600at 842.800 kb on + strand, within CSW01_18600at 842.800 kb on + strand, within CSW01_18600at 842.808 kb on - strand, within CSW01_18600at 842.808 kb on - strand, within CSW01_18600at 842.848 kb on + strand, within CSW01_18600at 842.848 kb on + strand, within CSW01_18600at 842.856 kb on - strand, within CSW01_18600at 842.891 kb on - strand, within CSW01_18600at 842.893 kb on + strand, within CSW01_18600at 842.893 kb on + strand, within CSW01_18600at 842.903 kb on + strand, within CSW01_18600at 842.930 kb on + strand, within CSW01_18600at 843.020 kb on - strandat 843.095 kb on - strandat 843.263 kb on + strandat 843.263 kb on + strandat 843.397 kb on + strand, within CSW01_18605at 843.397 kb on + strand, within CSW01_18605at 843.398 kb on + strand, within CSW01_18605at 843.433 kb on + strand, within CSW01_18605at 843.441 kb on - strand, within CSW01_18605at 843.443 kb on + strand, within CSW01_18605at 843.451 kb on - strand, within CSW01_18605at 843.460 kb on + strand, within CSW01_18605at 843.467 kb on + strand, within CSW01_18605at 843.467 kb on + strand, within CSW01_18605at 843.487 kb on + strand, within CSW01_18605at 843.487 kb on + strand, within CSW01_18605at 843.504 kb on + strand, within CSW01_18605at 843.615 kb on + strandat 843.635 kb on + strandat 843.653 kb on - strandat 843.681 kb on + strandat 843.718 kb on + strandat 843.732 kb on + strandat 843.740 kb on - strandat 843.767 kb on - strandat 843.963 kb on + strand, within CSW01_18610at 843.971 kb on - strand, within CSW01_18610at 844.010 kb on + strand, within CSW01_18610at 844.022 kb on + strand, within CSW01_18610at 844.022 kb on + strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.097 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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840,843 + CSW01_18590 0.55 -1.3
840,862 + CSW01_18590 0.57 -1.5
840,862 + CSW01_18590 0.57 +1.8
840,915 - CSW01_18590 0.63 -0.6
840,972 + CSW01_18590 0.69 +0.1
840,980 - CSW01_18590 0.70 +0.3
840,980 - CSW01_18590 0.70 -1.2
841,004 - CSW01_18590 0.73 -1.3
841,092 - CSW01_18590 0.82 +1.1
841,227 + -3.2
841,227 + -0.3
841,289 + -0.4
841,356 - CSW01_18595 0.26 +1.0
841,398 + CSW01_18595 0.37 +2.5
841,552 - CSW01_18595 0.77 +1.5
841,552 - CSW01_18595 0.77 +1.5
841,576 + CSW01_18595 0.84 +1.5
841,660 - +0.7
841,677 + -0.7
841,715 - +0.6
841,790 - -3.3
841,816 + +1.2
841,874 + CSW01_18600 0.11 +0.9
841,874 + CSW01_18600 0.11 +0.5
841,881 + CSW01_18600 0.12 -2.1
841,923 + CSW01_18600 0.15 +1.6
841,923 + CSW01_18600 0.15 +1.0
841,923 + CSW01_18600 0.15 +0.8
841,944 - CSW01_18600 0.16 -0.1
841,965 - CSW01_18600 0.18 +0.4
842,002 + CSW01_18600 0.20 -1.0
842,194 + CSW01_18600 0.34 +0.7
842,204 + CSW01_18600 0.35 -0.6
842,212 - CSW01_18600 0.35 -1.0
842,218 + CSW01_18600 0.36 -0.8
842,218 + CSW01_18600 0.36 +0.9
842,218 + CSW01_18600 0.36 +0.2
842,226 - CSW01_18600 0.36 +1.6
842,226 - CSW01_18600 0.36 +1.1
842,226 - CSW01_18600 0.36 -0.6
842,226 - CSW01_18600 0.36 -0.0
842,248 - CSW01_18600 0.38 +1.6
842,282 + CSW01_18600 0.40 +0.2
842,401 + CSW01_18600 0.48 +0.3
842,401 + CSW01_18600 0.48 -2.9
842,422 + CSW01_18600 0.50 -0.1
842,494 + CSW01_18600 0.55 -1.6
842,494 + CSW01_18600 0.55 -0.1
842,500 - CSW01_18600 0.55 -2.7
842,500 - CSW01_18600 0.55 +1.4
842,500 - CSW01_18600 0.55 +1.4
842,500 - CSW01_18600 0.55 -0.2
842,502 - CSW01_18600 0.56 +0.4
842,520 - CSW01_18600 0.57 -2.5
842,551 + CSW01_18600 0.59 +0.2
842,738 + CSW01_18600 0.72 +1.5
842,761 - CSW01_18600 0.74 +2.0
842,764 - CSW01_18600 0.74 -2.9
842,766 + CSW01_18600 0.74 +0.3
842,800 + CSW01_18600 0.77 +0.6
842,800 + CSW01_18600 0.77 -1.9
842,808 - CSW01_18600 0.77 +0.2
842,808 - CSW01_18600 0.77 -0.0
842,848 + CSW01_18600 0.80 +1.0
842,848 + CSW01_18600 0.80 -1.0
842,856 - CSW01_18600 0.81 -3.7
842,891 - CSW01_18600 0.83 -3.4
842,893 + CSW01_18600 0.83 -3.4
842,893 + CSW01_18600 0.83 -1.3
842,903 + CSW01_18600 0.84 -0.7
842,930 + CSW01_18600 0.86 -0.3
843,020 - -1.1
843,095 - -2.7
843,263 + -2.1
843,263 + -0.0
843,397 + CSW01_18605 0.39 +1.4
843,397 + CSW01_18605 0.39 -0.6
843,398 + CSW01_18605 0.40 -0.2
843,433 + CSW01_18605 0.48 +0.1
843,441 - CSW01_18605 0.50 -2.5
843,443 + CSW01_18605 0.51 -1.9
843,451 - CSW01_18605 0.53 -0.3
843,460 + CSW01_18605 0.55 -0.1
843,467 + CSW01_18605 0.57 +1.7
843,467 + CSW01_18605 0.57 -1.1
843,487 + CSW01_18605 0.62 +0.6
843,487 + CSW01_18605 0.62 -0.3
843,504 + CSW01_18605 0.66 +2.3
843,615 + +0.9
843,635 + +0.6
843,653 - -2.1
843,681 + +2.0
843,718 + +1.7
843,732 + -0.0
843,740 - -1.4
843,767 - +0.2
843,963 + CSW01_18610 0.57 +0.7
843,971 - CSW01_18610 0.59 +0.5
844,010 + CSW01_18610 0.69 -0.7
844,022 + CSW01_18610 0.72 +0.1
844,022 + CSW01_18610 0.72 +0.3
844,030 - CSW01_18610 0.74 +1.0
844,030 - CSW01_18610 0.74 +0.2
844,030 - CSW01_18610 0.74 -0.1
844,030 - CSW01_18610 0.74 -2.5
844,030 - CSW01_18610 0.74 +0.7
844,030 - CSW01_18610 0.74 +0.8
844,030 - CSW01_18610 0.74 -0.9
844,097 - -2.6

Or see this region's nucleotide sequence