Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18525

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18520 and CSW01_18525 are separated by 107 nucleotidesCSW01_18525 and CSW01_18530 are separated by 628 nucleotides CSW01_18520: CSW01_18520 - linear amide C-N hydrolase, at 828,897 to 829,973 _18520 CSW01_18525: CSW01_18525 - integrase, at 830,081 to 830,242 _18525 CSW01_18530: CSW01_18530 - hypothetical protein, at 830,871 to 831,251 _18530 Position (kb) 830 831Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 829.175 kb on + strand, within CSW01_18520at 829.237 kb on + strand, within CSW01_18520at 829.237 kb on + strand, within CSW01_18520at 829.273 kb on - strand, within CSW01_18520at 829.287 kb on - strand, within CSW01_18520at 829.287 kb on - strand, within CSW01_18520at 829.318 kb on - strand, within CSW01_18520at 829.332 kb on + strand, within CSW01_18520at 829.341 kb on - strand, within CSW01_18520at 829.366 kb on - strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.502 kb on + strand, within CSW01_18520at 829.502 kb on + strand, within CSW01_18520at 829.508 kb on - strand, within CSW01_18520at 829.510 kb on - strand, within CSW01_18520at 829.510 kb on - strand, within CSW01_18520at 829.517 kb on - strand, within CSW01_18520at 829.548 kb on + strand, within CSW01_18520at 829.635 kb on - strand, within CSW01_18520at 829.635 kb on - strand, within CSW01_18520at 829.650 kb on + strand, within CSW01_18520at 829.658 kb on - strand, within CSW01_18520at 829.677 kb on - strand, within CSW01_18520at 829.716 kb on + strand, within CSW01_18520at 829.724 kb on - strand, within CSW01_18520at 829.742 kb on + strand, within CSW01_18520at 829.742 kb on + strand, within CSW01_18520at 829.838 kb on + strand, within CSW01_18520at 829.893 kb on + strandat 829.906 kb on - strandat 829.940 kb on + strandat 829.971 kb on - strandat 830.040 kb on + strandat 830.106 kb on - strand, within CSW01_18525at 830.146 kb on - strand, within CSW01_18525at 830.206 kb on + strand, within CSW01_18525at 830.243 kb on - strandat 830.282 kb on + strandat 830.308 kb on - strandat 830.342 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.404 kb on - strandat 830.405 kb on - strandat 830.405 kb on - strandat 830.405 kb on - strandat 830.436 kb on - strandat 830.674 kb on + strandat 830.688 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.823 kb on + strandat 830.823 kb on + strandat 830.823 kb on + strandat 830.828 kb on + strandat 830.828 kb on + strandat 830.828 kb on + strandat 830.831 kb on - strandat 830.835 kb on - strandat 830.836 kb on - strandat 830.909 kb on - strand, within CSW01_18530at 830.919 kb on - strand, within CSW01_18530at 830.921 kb on - strand, within CSW01_18530at 830.923 kb on + strand, within CSW01_18530at 830.931 kb on - strand, within CSW01_18530at 830.963 kb on - strand, within CSW01_18530at 830.971 kb on - strand, within CSW01_18530at 830.981 kb on + strand, within CSW01_18530at 830.981 kb on + strand, within CSW01_18530at 830.990 kb on - strand, within CSW01_18530at 830.994 kb on + strand, within CSW01_18530at 830.997 kb on - strand, within CSW01_18530at 831.000 kb on + strand, within CSW01_18530at 831.002 kb on - strand, within CSW01_18530at 831.002 kb on - strand, within CSW01_18530at 831.002 kb on - strand, within CSW01_18530at 831.002 kb on - strand, within CSW01_18530at 831.008 kb on - strand, within CSW01_18530at 831.019 kb on - strand, within CSW01_18530at 831.034 kb on - strand, within CSW01_18530at 831.083 kb on + strand, within CSW01_18530at 831.092 kb on + strand, within CSW01_18530at 831.129 kb on + strand, within CSW01_18530at 831.143 kb on + strand, within CSW01_18530at 831.151 kb on + strand, within CSW01_18530at 831.151 kb on - strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.153 kb on + strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.161 kb on - strand, within CSW01_18530at 831.164 kb on + strand, within CSW01_18530at 831.170 kb on - strand, within CSW01_18530at 831.172 kb on - strand, within CSW01_18530at 831.172 kb on - strand, within CSW01_18530at 831.183 kb on + strand, within CSW01_18530at 831.183 kb on + strand, within CSW01_18530at 831.216 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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829,175 + CSW01_18520 0.26 +0.9
829,237 + CSW01_18520 0.32 +0.4
829,237 + CSW01_18520 0.32 -2.5
829,273 - CSW01_18520 0.35 +0.0
829,287 - CSW01_18520 0.36 -0.1
829,287 - CSW01_18520 0.36 +0.0
829,318 - CSW01_18520 0.39 -0.1
829,332 + CSW01_18520 0.40 +0.1
829,341 - CSW01_18520 0.41 -0.5
829,366 - CSW01_18520 0.44 +1.6
829,413 + CSW01_18520 0.48 +1.3
829,413 + CSW01_18520 0.48 +0.2
829,413 + CSW01_18520 0.48 -1.9
829,413 + CSW01_18520 0.48 +1.7
829,413 + CSW01_18520 0.48 +0.2
829,413 + CSW01_18520 0.48 +1.2
829,413 + CSW01_18520 0.48 +1.3
829,413 + CSW01_18520 0.48 -0.5
829,413 + CSW01_18520 0.48 -2.3
829,413 + CSW01_18520 0.48 -3.5
829,413 + CSW01_18520 0.48 -2.0
829,413 + CSW01_18520 0.48 -1.1
829,413 + CSW01_18520 0.48 -0.6
829,413 + CSW01_18520 0.48 -2.2
829,413 + CSW01_18520 0.48 +0.5
829,413 + CSW01_18520 0.48 +3.0
829,421 - CSW01_18520 0.49 +2.0
829,421 - CSW01_18520 0.49 -0.4
829,421 - CSW01_18520 0.49 -1.3
829,421 - CSW01_18520 0.49 -2.7
829,421 - CSW01_18520 0.49 +2.2
829,421 - CSW01_18520 0.49 +0.1
829,421 - CSW01_18520 0.49 -0.8
829,421 - CSW01_18520 0.49 +0.4
829,421 - CSW01_18520 0.49 +0.2
829,421 - CSW01_18520 0.49 +0.2
829,421 - CSW01_18520 0.49 -3.0
829,421 - CSW01_18520 0.49 +0.6
829,502 + CSW01_18520 0.56 +0.2
829,502 + CSW01_18520 0.56 -1.6
829,508 - CSW01_18520 0.57 +0.6
829,510 - CSW01_18520 0.57 -2.4
829,510 - CSW01_18520 0.57 +0.7
829,517 - CSW01_18520 0.58 -2.1
829,548 + CSW01_18520 0.60 -2.5
829,635 - CSW01_18520 0.69 -0.9
829,635 - CSW01_18520 0.69 +0.2
829,650 + CSW01_18520 0.70 +1.1
829,658 - CSW01_18520 0.71 +0.6
829,677 - CSW01_18520 0.72 +0.9
829,716 + CSW01_18520 0.76 -1.6
829,724 - CSW01_18520 0.77 -0.6
829,742 + CSW01_18520 0.78 +0.9
829,742 + CSW01_18520 0.78 -1.9
829,838 + CSW01_18520 0.87 -2.0
829,893 + +1.4
829,906 - +1.4
829,940 + +1.8
829,971 - -1.6
830,040 + +0.4
830,106 - CSW01_18525 0.15 -3.1
830,146 - CSW01_18525 0.40 -2.1
830,206 + CSW01_18525 0.77 +0.4
830,243 - +3.0
830,282 + +0.3
830,308 - -2.2
830,342 + -2.9
830,397 + +0.7
830,397 + -2.0
830,397 + +0.7
830,397 + +0.9
830,397 + +0.4
830,397 + -0.4
830,397 + +1.0
830,397 + +0.2
830,397 + -2.2
830,397 + -4.1
830,404 - -0.8
830,405 - +0.9
830,405 - +0.4
830,405 - +2.5
830,436 - +2.1
830,674 + -0.9
830,688 + +1.5
830,813 + -2.8
830,813 + -2.2
830,813 + -1.2
830,813 + -3.6
830,813 + -0.6
830,813 + -3.4
830,813 + +0.8
830,823 + -2.1
830,823 + -0.1
830,823 + -0.2
830,828 + +0.2
830,828 + +0.1
830,828 + -1.4
830,831 - +0.8
830,835 - -0.6
830,836 - -1.1
830,909 - CSW01_18530 0.10 +0.0
830,919 - CSW01_18530 0.13 -3.8
830,921 - CSW01_18530 0.13 -2.6
830,923 + CSW01_18530 0.14 +0.4
830,931 - CSW01_18530 0.16 -2.5
830,963 - CSW01_18530 0.24 -0.1
830,971 - CSW01_18530 0.26 -2.4
830,981 + CSW01_18530 0.29 -4.0
830,981 + CSW01_18530 0.29 -3.1
830,990 - CSW01_18530 0.31 +0.3
830,994 + CSW01_18530 0.32 -2.8
830,997 - CSW01_18530 0.33 +0.2
831,000 + CSW01_18530 0.34 -2.7
831,002 - CSW01_18530 0.34 +0.4
831,002 - CSW01_18530 0.34 -1.8
831,002 - CSW01_18530 0.34 -1.6
831,002 - CSW01_18530 0.34 -0.3
831,008 - CSW01_18530 0.36 -0.4
831,019 - CSW01_18530 0.39 +0.8
831,034 - CSW01_18530 0.43 +0.1
831,083 + CSW01_18530 0.56 -2.3
831,092 + CSW01_18530 0.58 +0.7
831,129 + CSW01_18530 0.68 -1.6
831,143 + CSW01_18530 0.71 +0.7
831,151 + CSW01_18530 0.73 -2.1
831,151 - CSW01_18530 0.73 +1.0
831,153 + CSW01_18530 0.74 -1.0
831,153 + CSW01_18530 0.74 -1.0
831,153 + CSW01_18530 0.74 -2.3
831,153 + CSW01_18530 0.74 -0.3
831,153 + CSW01_18530 0.74 +0.0
831,153 + CSW01_18530 0.74 +0.2
831,153 + CSW01_18530 0.74 +0.6
831,153 + CSW01_18530 0.74 -1.1
831,153 + CSW01_18530 0.74 -2.7
831,153 + CSW01_18530 0.74 +1.6
831,153 + CSW01_18530 0.74 +0.6
831,153 + CSW01_18530 0.74 +0.8
831,153 + CSW01_18530 0.74 +1.1
831,153 + CSW01_18530 0.74 +1.2
831,153 + CSW01_18530 0.74 -3.5
831,153 + CSW01_18530 0.74 +0.6
831,153 + CSW01_18530 0.74 -0.1
831,161 - CSW01_18530 0.76 -1.5
831,161 - CSW01_18530 0.76 +3.4
831,161 - CSW01_18530 0.76 -2.1
831,161 - CSW01_18530 0.76 -2.4
831,161 - CSW01_18530 0.76 +1.4
831,161 - CSW01_18530 0.76 +0.8
831,161 - CSW01_18530 0.76 +0.3
831,161 - CSW01_18530 0.76 -3.1
831,161 - CSW01_18530 0.76 -1.2
831,161 - CSW01_18530 0.76 -2.2
831,161 - CSW01_18530 0.76 -1.7
831,161 - CSW01_18530 0.76 +0.6
831,161 - CSW01_18530 0.76 +0.2
831,161 - CSW01_18530 0.76 -0.0
831,161 - CSW01_18530 0.76 -1.2
831,161 - CSW01_18530 0.76 -2.9
831,161 - CSW01_18530 0.76 +0.5
831,161 - CSW01_18530 0.76 -2.8
831,161 - CSW01_18530 0.76 +0.7
831,161 - CSW01_18530 0.76 -0.1
831,161 - CSW01_18530 0.76 +1.2
831,161 - CSW01_18530 0.76 -0.5
831,161 - CSW01_18530 0.76 +0.2
831,161 - CSW01_18530 0.76 -0.5
831,164 + CSW01_18530 0.77 -2.7
831,170 - CSW01_18530 0.78 +0.4
831,172 - CSW01_18530 0.79 +0.5
831,172 - CSW01_18530 0.79 -0.3
831,183 + CSW01_18530 0.82 +0.4
831,183 + CSW01_18530 0.82 -2.4
831,216 + +0.2

Or see this region's nucleotide sequence