Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18500

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18490 and CSW01_18495 overlap by 53 nucleotidesCSW01_18495 and CSW01_18500 are separated by 130 nucleotidesCSW01_18500 and CSW01_18505 are separated by 396 nucleotidesCSW01_18505 and CSW01_18510 are separated by 216 nucleotides CSW01_18490: CSW01_18490 - cytochrome d ubiquinol oxidase subunit II, at 823,742 to 824,878 _18490 CSW01_18495: CSW01_18495 - cytochrome bd-I oxidase subunit CydX, at 824,826 to 824,990 _18495 CSW01_18500: CSW01_18500 - hypothetical protein, at 825,121 to 825,303 _18500 CSW01_18505: CSW01_18505 - hypothetical protein, at 825,700 to 825,903 _18505 CSW01_18510: CSW01_18510 - D-serine dehydratase, at 826,120 to 827,445 _18510 Position (kb) 825 826Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 824.240 kb on - strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.293 kb on - strand, within CSW01_18490at 824.293 kb on - strand, within CSW01_18490at 824.293 kb on - strand, within CSW01_18490at 824.293 kb on - strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.303 kb on - strand, within CSW01_18490at 824.303 kb on - strand, within CSW01_18490at 824.303 kb on - strand, within CSW01_18490at 824.303 kb on - strand, within CSW01_18490at 824.356 kb on + strand, within CSW01_18490at 824.397 kb on + strand, within CSW01_18490at 824.397 kb on + strand, within CSW01_18490at 824.397 kb on + strand, within CSW01_18490at 824.405 kb on - strand, within CSW01_18490at 824.405 kb on - strand, within CSW01_18490at 824.439 kb on + strand, within CSW01_18490at 824.446 kb on + strand, within CSW01_18490at 824.454 kb on - strand, within CSW01_18490at 824.504 kb on - strand, within CSW01_18490at 824.535 kb on + strand, within CSW01_18490at 824.543 kb on - strand, within CSW01_18490at 824.551 kb on - strand, within CSW01_18490at 824.578 kb on + strand, within CSW01_18490at 824.581 kb on - strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.614 kb on + strand, within CSW01_18490at 824.614 kb on + strand, within CSW01_18490at 824.617 kb on - strand, within CSW01_18490at 824.617 kb on - strand, within CSW01_18490at 824.617 kb on - strand, within CSW01_18490at 824.618 kb on - strand, within CSW01_18490at 824.691 kb on + strand, within CSW01_18490at 824.691 kb on + strand, within CSW01_18490at 824.691 kb on + strand, within CSW01_18490at 824.691 kb on + strand, within CSW01_18490at 824.699 kb on - strand, within CSW01_18490at 824.699 kb on - strand, within CSW01_18490at 824.699 kb on - strand, within CSW01_18490at 824.699 kb on - strand, within CSW01_18490at 824.709 kb on + strand, within CSW01_18490at 824.711 kb on - strand, within CSW01_18490at 824.717 kb on - strand, within CSW01_18490at 824.717 kb on - strand, within CSW01_18490at 824.745 kb on + strand, within CSW01_18490at 824.762 kb on + strand, within CSW01_18490at 824.762 kb on + strand, within CSW01_18490at 824.770 kb on - strandat 824.802 kb on - strandat 824.804 kb on + strandat 824.812 kb on - strandat 824.817 kb on + strandat 824.825 kb on - strandat 824.872 kb on + strandat 824.872 kb on + strandat 824.878 kb on - strandat 824.878 kb on - strandat 824.914 kb on - strand, within CSW01_18495at 824.936 kb on - strand, within CSW01_18495at 824.984 kb on + strandat 824.984 kb on + strandat 824.984 kb on + strandat 824.985 kb on + strandat 824.985 kb on + strandat 824.985 kb on + strandat 824.985 kb on + strandat 824.985 kb on + strandat 824.990 kb on + strandat 824.992 kb on - strandat 824.992 kb on - strandat 824.992 kb on - strandat 824.993 kb on - strandat 824.995 kb on + strandat 825.003 kb on - strandat 825.003 kb on - strandat 825.008 kb on + strandat 825.008 kb on + strandat 825.008 kb on + strandat 825.011 kb on + strandat 825.045 kb on + strandat 825.081 kb on + strandat 825.093 kb on - strandat 825.104 kb on - strandat 825.106 kb on - strandat 825.131 kb on + strandat 825.150 kb on - strand, within CSW01_18500at 825.150 kb on - strand, within CSW01_18500at 825.162 kb on - strand, within CSW01_18500at 825.169 kb on + strand, within CSW01_18500at 825.177 kb on + strand, within CSW01_18500at 825.218 kb on + strand, within CSW01_18500at 825.224 kb on + strand, within CSW01_18500at 825.234 kb on - strand, within CSW01_18500at 825.236 kb on + strand, within CSW01_18500at 825.236 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.243 kb on + strand, within CSW01_18500at 825.244 kb on - strand, within CSW01_18500at 825.250 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.251 kb on - strand, within CSW01_18500at 825.253 kb on + strand, within CSW01_18500at 825.255 kb on + strand, within CSW01_18500at 825.255 kb on + strand, within CSW01_18500at 825.255 kb on + strand, within CSW01_18500at 825.255 kb on + strand, within CSW01_18500at 825.263 kb on - strand, within CSW01_18500at 825.263 kb on - strand, within CSW01_18500at 825.281 kb on - strand, within CSW01_18500at 825.420 kb on + strandat 825.546 kb on - strandat 825.692 kb on + strandat 825.778 kb on + strand, within CSW01_18505at 825.780 kb on + strand, within CSW01_18505at 825.780 kb on + strand, within CSW01_18505at 825.780 kb on + strand, within CSW01_18505at 825.786 kb on - strand, within CSW01_18505at 825.799 kb on + strand, within CSW01_18505at 825.821 kb on + strand, within CSW01_18505at 825.821 kb on + strand, within CSW01_18505at 825.821 kb on + strand, within CSW01_18505at 825.821 kb on + strand, within CSW01_18505at 825.821 kb on + strand, within CSW01_18505at 825.821 kb on + strand, within CSW01_18505at 825.821 kb on + strand, within CSW01_18505at 825.821 kb on + strand, within CSW01_18505at 825.828 kb on + strand, within CSW01_18505at 825.828 kb on + strand, within CSW01_18505at 825.829 kb on - strand, within CSW01_18505at 825.829 kb on - strand, within CSW01_18505at 825.829 kb on - strand, within CSW01_18505at 825.829 kb on - strand, within CSW01_18505at 825.829 kb on - strand, within CSW01_18505at 825.829 kb on - strand, within CSW01_18505at 825.836 kb on - strand, within CSW01_18505at 825.836 kb on - strand, within CSW01_18505at 825.836 kb on - strand, within CSW01_18505at 825.884 kb on + strandat 825.920 kb on + strandat 825.920 kb on + strandat 825.944 kb on - strandat 825.962 kb on + strandat 825.984 kb on - strandat 826.034 kb on - strandat 826.039 kb on + strandat 826.041 kb on + strandat 826.047 kb on - strandat 826.047 kb on - strandat 826.049 kb on - strandat 826.049 kb on - strandat 826.061 kb on + strandat 826.061 kb on + strandat 826.069 kb on + strandat 826.069 kb on - strandat 826.069 kb on - strandat 826.069 kb on - strandat 826.077 kb on - strandat 826.245 kb on - strandat 826.247 kb on - strandat 826.260 kb on + strand, within CSW01_18510at 826.268 kb on - strand, within CSW01_18510at 826.268 kb on - strand, within CSW01_18510at 826.279 kb on + strand, within CSW01_18510at 826.292 kb on + strand, within CSW01_18510

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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824,240 - CSW01_18490 0.44 -1.6
824,285 + CSW01_18490 0.48 +0.3
824,285 + CSW01_18490 0.48 -3.8
824,285 + CSW01_18490 0.48 +1.0
824,285 + CSW01_18490 0.48 -0.4
824,285 + CSW01_18490 0.48 +0.3
824,285 + CSW01_18490 0.48 -1.0
824,285 + CSW01_18490 0.48 -0.2
824,285 + CSW01_18490 0.48 +0.3
824,285 + CSW01_18490 0.48 -1.2
824,285 + CSW01_18490 0.48 -0.9
824,285 + CSW01_18490 0.48 -1.9
824,293 - CSW01_18490 0.48 -0.3
824,293 - CSW01_18490 0.48 -2.7
824,293 - CSW01_18490 0.48 +0.4
824,293 - CSW01_18490 0.48 +1.9
824,295 + CSW01_18490 0.49 +0.8
824,295 + CSW01_18490 0.49 +1.1
824,295 + CSW01_18490 0.49 +1.1
824,295 + CSW01_18490 0.49 -2.0
824,295 + CSW01_18490 0.49 -2.6
824,303 - CSW01_18490 0.49 -0.8
824,303 - CSW01_18490 0.49 +0.0
824,303 - CSW01_18490 0.49 -2.4
824,303 - CSW01_18490 0.49 +0.4
824,356 + CSW01_18490 0.54 +1.2
824,397 + CSW01_18490 0.58 -2.7
824,397 + CSW01_18490 0.58 +0.0
824,397 + CSW01_18490 0.58 -0.3
824,405 - CSW01_18490 0.58 +1.9
824,405 - CSW01_18490 0.58 +0.1
824,439 + CSW01_18490 0.61 +0.1
824,446 + CSW01_18490 0.62 +0.1
824,454 - CSW01_18490 0.63 +1.2
824,504 - CSW01_18490 0.67 -3.4
824,535 + CSW01_18490 0.70 -0.1
824,543 - CSW01_18490 0.70 +0.0
824,551 - CSW01_18490 0.71 -2.8
824,578 + CSW01_18490 0.74 -0.6
824,581 - CSW01_18490 0.74 -0.8
824,609 + CSW01_18490 0.76 +1.1
824,609 + CSW01_18490 0.76 +0.4
824,609 + CSW01_18490 0.76 +1.1
824,609 + CSW01_18490 0.76 +1.3
824,609 + CSW01_18490 0.76 +0.9
824,614 + CSW01_18490 0.77 -0.0
824,614 + CSW01_18490 0.77 +0.4
824,617 - CSW01_18490 0.77 +0.9
824,617 - CSW01_18490 0.77 -0.5
824,617 - CSW01_18490 0.77 +2.2
824,618 - CSW01_18490 0.77 -0.9
824,691 + CSW01_18490 0.83 +1.4
824,691 + CSW01_18490 0.83 +1.7
824,691 + CSW01_18490 0.83 -1.6
824,691 + CSW01_18490 0.83 +1.4
824,699 - CSW01_18490 0.84 -0.3
824,699 - CSW01_18490 0.84 -3.0
824,699 - CSW01_18490 0.84 -0.4
824,699 - CSW01_18490 0.84 -1.9
824,709 + CSW01_18490 0.85 -2.7
824,711 - CSW01_18490 0.85 -2.3
824,717 - CSW01_18490 0.86 -0.4
824,717 - CSW01_18490 0.86 -0.5
824,745 + CSW01_18490 0.88 -2.0
824,762 + CSW01_18490 0.90 +0.5
824,762 + CSW01_18490 0.90 -0.2
824,770 - -1.4
824,802 - -1.1
824,804 + -0.0
824,812 - +0.6
824,817 + +0.5
824,825 - +1.0
824,872 + -2.6
824,872 + -0.3
824,878 - +0.2
824,878 - -0.3
824,914 - CSW01_18495 0.53 +0.3
824,936 - CSW01_18495 0.67 -1.9
824,984 + +1.3
824,984 + -4.1
824,984 + +1.4
824,985 + +0.8
824,985 + -0.4
824,985 + -3.4
824,985 + +0.1
824,985 + -0.0
824,990 + +0.5
824,992 - +0.5
824,992 - +0.1
824,992 - +1.1
824,993 - -1.3
824,995 + +0.8
825,003 - -0.9
825,003 - -2.0
825,008 + -2.6
825,008 + +0.9
825,008 + -1.2
825,011 + +0.4
825,045 + +0.2
825,081 + -1.9
825,093 - +0.1
825,104 - -1.0
825,106 - +2.3
825,131 + +0.5
825,150 - CSW01_18500 0.16 +1.1
825,150 - CSW01_18500 0.16 +1.2
825,162 - CSW01_18500 0.22 -3.4
825,169 + CSW01_18500 0.26 +0.7
825,177 + CSW01_18500 0.31 +1.1
825,218 + CSW01_18500 0.53 -0.1
825,224 + CSW01_18500 0.56 -2.2
825,234 - CSW01_18500 0.62 +1.6
825,236 + CSW01_18500 0.63 -1.4
825,236 + CSW01_18500 0.63 -4.0
825,243 + CSW01_18500 0.67 +0.7
825,243 + CSW01_18500 0.67 -1.3
825,243 + CSW01_18500 0.67 -2.6
825,243 + CSW01_18500 0.67 -1.3
825,243 + CSW01_18500 0.67 +0.2
825,243 + CSW01_18500 0.67 -0.0
825,243 + CSW01_18500 0.67 -2.6
825,243 + CSW01_18500 0.67 +0.3
825,243 + CSW01_18500 0.67 -3.9
825,243 + CSW01_18500 0.67 +0.5
825,243 + CSW01_18500 0.67 +0.2
825,243 + CSW01_18500 0.67 -0.8
825,243 + CSW01_18500 0.67 -0.0
825,243 + CSW01_18500 0.67 +0.5
825,243 + CSW01_18500 0.67 -0.6
825,243 + CSW01_18500 0.67 +0.9
825,243 + CSW01_18500 0.67 -0.8
825,243 + CSW01_18500 0.67 -2.5
825,243 + CSW01_18500 0.67 -0.3
825,243 + CSW01_18500 0.67 -1.3
825,243 + CSW01_18500 0.67 +1.2
825,243 + CSW01_18500 0.67 -1.8
825,243 + CSW01_18500 0.67 -2.9
825,243 + CSW01_18500 0.67 -1.9
825,243 + CSW01_18500 0.67 +1.1
825,243 + CSW01_18500 0.67 +0.1
825,244 - CSW01_18500 0.67 -0.8
825,250 - CSW01_18500 0.70 -0.4
825,251 - CSW01_18500 0.71 +0.5
825,251 - CSW01_18500 0.71 -1.7
825,251 - CSW01_18500 0.71 +1.4
825,251 - CSW01_18500 0.71 +1.8
825,251 - CSW01_18500 0.71 -3.9
825,251 - CSW01_18500 0.71 +0.3
825,251 - CSW01_18500 0.71 +0.5
825,251 - CSW01_18500 0.71 -1.3
825,251 - CSW01_18500 0.71 +1.3
825,251 - CSW01_18500 0.71 -0.1
825,251 - CSW01_18500 0.71 +0.9
825,251 - CSW01_18500 0.71 +0.2
825,251 - CSW01_18500 0.71 -1.7
825,251 - CSW01_18500 0.71 +1.0
825,251 - CSW01_18500 0.71 +0.8
825,251 - CSW01_18500 0.71 +0.9
825,251 - CSW01_18500 0.71 -0.6
825,251 - CSW01_18500 0.71 -1.4
825,251 - CSW01_18500 0.71 +1.5
825,251 - CSW01_18500 0.71 -2.7
825,251 - CSW01_18500 0.71 -0.5
825,251 - CSW01_18500 0.71 +0.7
825,251 - CSW01_18500 0.71 -1.5
825,251 - CSW01_18500 0.71 -1.3
825,251 - CSW01_18500 0.71 +1.9
825,251 - CSW01_18500 0.71 +0.3
825,251 - CSW01_18500 0.71 +1.2
825,253 + CSW01_18500 0.72 -0.7
825,255 + CSW01_18500 0.73 -2.6
825,255 + CSW01_18500 0.73 -0.6
825,255 + CSW01_18500 0.73 +0.6
825,255 + CSW01_18500 0.73 +1.4
825,263 - CSW01_18500 0.78 +1.6
825,263 - CSW01_18500 0.78 -0.2
825,281 - CSW01_18500 0.87 -3.7
825,420 + -0.4
825,546 - -0.6
825,692 + -1.6
825,778 + CSW01_18505 0.38 +0.4
825,780 + CSW01_18505 0.39 -0.2
825,780 + CSW01_18505 0.39 -0.2
825,780 + CSW01_18505 0.39 +0.3
825,786 - CSW01_18505 0.42 +0.5
825,799 + CSW01_18505 0.49 +0.8
825,821 + CSW01_18505 0.59 -1.5
825,821 + CSW01_18505 0.59 -2.0
825,821 + CSW01_18505 0.59 -0.1
825,821 + CSW01_18505 0.59 -0.3
825,821 + CSW01_18505 0.59 +0.4
825,821 + CSW01_18505 0.59 +0.5
825,821 + CSW01_18505 0.59 -2.9
825,821 + CSW01_18505 0.59 +1.1
825,828 + CSW01_18505 0.63 -0.7
825,828 + CSW01_18505 0.63 +0.8
825,829 - CSW01_18505 0.63 +1.4
825,829 - CSW01_18505 0.63 +2.1
825,829 - CSW01_18505 0.63 -0.3
825,829 - CSW01_18505 0.63 -2.4
825,829 - CSW01_18505 0.63 -0.4
825,829 - CSW01_18505 0.63 -1.9
825,836 - CSW01_18505 0.67 +0.2
825,836 - CSW01_18505 0.67 -2.3
825,836 - CSW01_18505 0.67 +1.5
825,884 + +1.1
825,920 + -0.8
825,920 + -0.1
825,944 - +0.6
825,962 + +1.0
825,984 - +0.5
826,034 - -0.8
826,039 + -3.3
826,041 + +1.3
826,047 - +0.9
826,047 - +0.4
826,049 - +1.4
826,049 - +0.5
826,061 + +0.2
826,061 + -0.1
826,069 + +0.4
826,069 - -1.1
826,069 - -1.3
826,069 - -1.4
826,077 - -2.8
826,245 - -0.2
826,247 - +0.7
826,260 + CSW01_18510 0.11 -1.2
826,268 - CSW01_18510 0.11 +0.2
826,268 - CSW01_18510 0.11 -1.9
826,279 + CSW01_18510 0.12 -2.7
826,292 + CSW01_18510 0.13 +0.3

Or see this region's nucleotide sequence